Variant report

Variant	rs533156337
Chromosome Location	chr3:51396948-51396949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:51396073..51397760-chr3:51426221..51429098,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179837	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	esv20206	chr3:51344873-51415825	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv460534	chr3:51393046-51416108	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv590274	chr3:51393046-51416108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv460535	chr3:51395571-51416108	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv590275	chr3:51395571-51416108	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv460536	chr3:51395571-51469107	Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv590276	chr3:51395571-51469107	Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51378000-51399800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:51378600-51421000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:51378800-51421400	Weak transcription	Right Ventricle	heart
4	chr3:51379000-51414600	Weak transcription	Left Ventricle	heart
5	chr3:51379200-51399800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:51379400-51403400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:51380000-51398400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:51380000-51398400	Weak transcription	Aorta	Aorta
9	chr3:51384200-51420600	Weak transcription	Fetal Brain Male	brain
10	chr3:51385400-51405600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:51386400-51405400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:51388400-51400800	Strong transcription	Brain Angular Gyrus	brain
13	chr3:51390200-51400400	Strong transcription	Fetal Brain Female	brain
14	chr3:51391600-51406800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:51391800-51400400	Strong transcription	Brain Germinal Matrix	brain
16	chr3:51392000-51400600	Strong transcription	Brain Anterior Caudate	brain
17	chr3:51392800-51400800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:51392800-51418600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:51393000-51400800	Strong transcription	Brain Inferior Temporal Lobe	brain
20	chr3:51393200-51405600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:51393600-51401000	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr3:51393800-51398600	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr3:51393800-51400800	Strong transcription	Brain Hippocampus Middle	brain
24	chr3:51394000-51405400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:51394400-51400800	Strong transcription	Brain Cingulate Gyrus	brain
26	chr3:51394400-51400800	Strong transcription	HSMMtube	muscle
27	chr3:51394600-51405400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr3:51395000-51399400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:51395200-51398000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:51395400-51397000	Weak transcription	Gastric	stomach
31	chr3:51395400-51400400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr3:51395800-51397200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:51395800-51397600	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr3:51396000-51400200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr3:51396400-51397200	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr3:51396600-51398000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr3:51396600-51400800	Strong transcription	Brain Substantia Nigra	brain

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