Variant report

Variant	rs533266166
Chromosome Location	chr4:107235239-107235240
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:107233370-107235724	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107158622..107160496-chr4:107233252..107235582,2	MCF-7	breast:
2	chr4:107226289..107231817-chr4:107234990..107238909,9	MCF-7	breast:

Variant related genes	Relation type
TBCK	TF binding region
AIMP1	TF binding region
ENSG00000145348	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1819960	chr4:107216320-107246136	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	esv12978	chr4:107234806-107235341	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:107155600-107236000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:107178000-107236200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:107178000-107236200	Weak transcription	Right Ventricle	heart
5	chr4:107178000-107236600	Weak transcription	Esophagus	oesophagus
6	chr4:107178000-107236600	Weak transcription	Pancreas	Pancrea
7	chr4:107178200-107236000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:107198800-107235600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:107202800-107236000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:107204000-107235800	Weak transcription	Psoas Muscle	Psoas
11	chr4:107204000-107236200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:107205600-107236000	Weak transcription	Brain Anterior Caudate	brain
13	chr4:107209200-107236000	Weak transcription	HMEC	breast
14	chr4:107213200-107235600	Weak transcription	Fetal Kidney	kidney
15	chr4:107213200-107236200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:107213400-107236000	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:107213400-107236200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:107215600-107236000	Weak transcription	Brain Germinal Matrix	brain
19	chr4:107215600-107236200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr4:107215800-107236600	Weak transcription	Small Intestine	intestine
21	chr4:107215800-107236800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:107216000-107235600	Weak transcription	Fetal Intestine Small	intestine
23	chr4:107216200-107236200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr4:107216200-107236200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr4:107216200-107236200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr4:107216400-107236000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr4:107216400-107236200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr4:107216400-107236200	Weak transcription	Thymus	Thymus
29	chr4:107216400-107236600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr4:107217800-107236000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr4:107218800-107236200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr4:107220200-107235600	Weak transcription	Fetal Brain Male	brain
33	chr4:107221200-107236000	Weak transcription	Placenta	Placenta
34	chr4:107221200-107236000	Weak transcription	HUVEC	blood vessel
35	chr4:107221200-107236600	Weak transcription	Left Ventricle	heart
36	chr4:107221400-107236000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr4:107221400-107236000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr4:107221400-107236200	Weak transcription	Fetal Stomach	stomach
39	chr4:107221800-107236200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr4:107223600-107236000	Weak transcription	Brain Hippocampus Middle	brain
41	chr4:107223600-107236200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:107223600-107236200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr4:107224000-107236200	Weak transcription	Stomach Mucosa	stomach
44	chr4:107224000-107236400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr4:107226200-107235600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr4:107226200-107235800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr4:107227400-107236200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr4:107228000-107235600	Weak transcription	Fetal Intestine Large	intestine
49	chr4:107228000-107236200	Weak transcription	Fetal Muscle Leg	muscle
50	chr4:107228000-107236200	Weak transcription	Placenta Amnion	Placenta Amnion

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