Variant report

Variant	rs533276752
Chromosome Location	chr11:71799123-71799124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:71798957-71799481	HepG2	liver:	n/a	n/a
2	TEAD4	chr11:71799079-71799503	K562	blood:	n/a	n/a
3	IRF1	chr11:71799097-71799326	K562	blood:	n/a	n/a
4	CCNT2	chr11:71799107-71799443	K562	blood:	n/a	n/a
5	POLR2A	chr11:71796837-71799431	K562	blood:	n/a	n/a
6	HMGN3	chr11:71799043-71799441	K562	blood:	n/a	n/a
7	RCOR1	chr11:71799079-71799492	K562	blood:	n/a	n/a
8	TEAD4	chr11:71799104-71799577	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:71789600..71791756-chr11:71798522..71801102,2	MCF-7	breast:
2	chr11:71735259..71738046-chr11:71798702..71801474,2	MCF-7	breast:
3	chr11:71733947..71737964-chr11:71799047..71803336,5	MCF-7	breast:
4	chr11:71743810..71760160-chr11:71777190..71805714,79	MCF-7	breast:
5	chr11:71779732..71781998-chr11:71797035..71799576,2	K562	blood:
6	chr11:71748762..71757629-chr11:71789138..71799261,28	MCF-7	breast:
7	chr11:71795514..71800060-chr11:71810684..71814982,4	MCF-7	breast:

No data

Variant related genes	Relation type
LRTOMT	TF binding region
ENSG00000137497	Chromatin interaction
ENSG00000184154	Chromatin interaction
ENSG00000149357	Chromatin interaction
ENSG00000206783	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv825989	chr11:71798818-71799495	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71792400-71799200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:71792400-71799400	Weak transcription	Ovary	ovary
3	chr11:71792400-71802600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:71792400-71805200	Weak transcription	HSMMtube	muscle
5	chr11:71792400-71805800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:71792600-71799200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:71792600-71799200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:71792600-71799200	Weak transcription	Osteobl	bone
9	chr11:71792600-71799400	Weak transcription	HSMM	muscle
10	chr11:71792600-71800800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:71792600-71802000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:71792600-71802400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:71792600-71804200	Weak transcription	Aorta	Aorta
14	chr11:71792600-71804800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:71792600-71805400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:71792600-71805400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:71792600-71805400	Weak transcription	Colonic Mucosa	Colon
18	chr11:71792600-71805600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:71792600-71805600	Weak transcription	Esophagus	oesophagus
20	chr11:71792600-71805600	Weak transcription	Pancreas	Pancrea
21	chr11:71792600-71808800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:71792600-71809000	Weak transcription	Psoas Muscle	Psoas
23	chr11:71792600-71812800	Weak transcription	Fetal Heart	heart
24	chr11:71792600-71813200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:71792800-71799400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:71792800-71801000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:71792800-71801000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:71792800-71801400	Weak transcription	HepG2	liver
29	chr11:71792800-71801800	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:71792800-71801800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:71792800-71802000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr11:71792800-71802000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:71792800-71802200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:71792800-71804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:71792800-71808200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:71792800-71808200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:71793000-71799400	Weak transcription	Spleen	Spleen
38	chr11:71793000-71808400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr11:71793200-71799200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:71793200-71799200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:71793200-71808400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr11:71793400-71801000	Weak transcription	A549	lung
43	chr11:71793400-71802200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr11:71793400-71802600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:71793400-71803000	Weak transcription	GM12878-XiMat	blood
46	chr11:71793400-71805400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:71793600-71799200	Weak transcription	Hela-S3	cervix
48	chr11:71793600-71799400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr11:71793600-71802200	Weak transcription	Stomach Mucosa	stomach
50	chr11:71793800-71799200	Weak transcription	Primary T cells from cord blood	blood

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