Variant report

Variant	rs533306664
Chromosome Location	chr14:66476152-66476153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr14:66475851-66476192	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr14:66475889-66476159	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr14:66475897-66476206	MCF10A-Er-Src	breast:	n/a	n/a
4	KAP1	chr14:66475871-66476174	U2OS	brain:	n/a	n/a
5	JUND	chr14:66475922-66476187	H1-hESC	embryonic stem cell:	n/a	chr14:66476017-66476025 chr14:66476015-66476027
6	FOS	chr14:66475841-66476207	MCF10A-Er-Src	breast:	n/a	chr14:66476017-66476025 chr14:66476015-66476027
7	FOS	chr14:66475842-66476222	MCF10A-Er-Src	breast:	n/a	chr14:66476017-66476025 chr14:66476015-66476027
8	FOXP2	chr14:66475785-66476160	SK-N-MC	brain:	n/a	n/a
9	POLR2A	chr14:66476088-66476252	MCF10A-Er-Src	breast:	n/a	n/a
10	MYC	chr14:66475926-66476169	MCF10A-Er-Src	breast:	n/a	chr14:66476016-66476025
11	FOS	chr14:66475845-66476261	MCF10A-Er-Src	breast:	n/a	chr14:66476017-66476025 chr14:66476015-66476027
12	MYC	chr14:66475883-66476192	MCF10A-Er-Src	breast:	n/a	chr14:66476016-66476025
13	FOS	chr14:66475845-66476262	MCF10A-Er-Src	breast:	n/a	chr14:66476017-66476025 chr14:66476015-66476027
14	POLR2A	chr14:66475735-66476238	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66471411..66473485-chr14:66474292..66477179,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258847	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
2	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv817409	chr14:66220075-66990168	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv564953	chr14:66287921-67046960	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv1050485	chr14:66308283-67109270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv530775	chr14:66316836-67079049	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
7	nsv530793	chr14:66317036-67078908	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
8	nsv1046455	chr14:66345369-66848234	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	nsv1043864	chr14:66372458-66845503	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv917338	chr14:66376591-66841403	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	nsv974350	chr14:66475804-66480245	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66470600-66478400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr14:66471200-66477000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:66474800-66476200	Enhancers	HSMMtube	muscle
4	chr14:66474800-66476600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:66475000-66476200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:66475000-66476200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr14:66475200-66476200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:66475200-66476600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:66475400-66476200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr14:66475400-66476200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:66475400-66476200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:66475400-66476200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr14:66475400-66476200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:66475400-66479000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr14:66475600-66476400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr14:66475600-66477200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr14:66475600-66477400	Weak transcription	Right Atrium	heart
18	chr14:66475800-66476200	Enhancers	H9 Cell Line	embryonic stem cell
19	chr14:66475800-66476200	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr14:66475800-66476400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr14:66475800-66476400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr14:66475800-66476400	Enhancers	NHDF-Ad	bronchial
23	chr14:66476000-66476200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr14:66476000-66476200	Enhancers	Primary hematopoietic stem cells	blood
25	chr14:66476000-66476200	Enhancers	Fetal Stomach	stomach

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