Variant report

Variant	rs533315960
Chromosome Location	chr20:25046769-25046770
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:24980910..24981445-chr20:25046435..25046961,2	MCF-7	breast:
2	chr20:25046117..25046996-chr20:25159492..25160465,5	MCF-7	breast:
3	chr20:24974184..24976552-chr20:25044724..25047326,32	MCF-7	breast:
4	chr20:25046045..25046980-chr20:25057133..25058078,4	MCF-7	breast:
5	chr20:24975151..24976233-chr20:25045881..25047015,16	MCF-7	breast:
6	chr20:24974024..24975149-chr20:25046038..25047090,7	MCF-7	breast:
7	chr20:24980657..24981409-chr20:25046140..25046996,4	MCF-7	breast:
8	chr20:24975304..24980368-chr20:25042845..25047055,6	MCF-7	breast:
9	chr20:24972253..24980445-chr20:25044479..25049663,13	MCF-7	breast:
10	chr20:24974985..24976149-chr20:25046073..25047055,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000101474	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv912826	chr20:24987787-25071454	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3345945	chr20:25046552-25049850	Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3361205	chr20:25046552-25049950	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25044600-25047800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:25044800-25046800	Enhancers	Brain Anterior Caudate	brain
3	chr20:25044800-25046800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr20:25044800-25047400	Enhancers	Placenta	Placenta
5	chr20:25045000-25047400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr20:25045200-25046800	Enhancers	Brain Hippocampus Middle	brain
7	chr20:25045200-25046800	Enhancers	Stomach Mucosa	stomach
8	chr20:25045200-25047200	Enhancers	Fetal Intestine Large	intestine
9	chr20:25045400-25046800	Enhancers	Fetal Intestine Small	intestine
10	chr20:25045400-25047800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr20:25045600-25046800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr20:25045600-25046800	Enhancers	Liver	Liver
13	chr20:25045800-25046800	Enhancers	Primary B cells from peripheral blood	blood
14	chr20:25045800-25046800	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr20:25045800-25046800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr20:25045800-25048000	Enhancers	Gastric	stomach
17	chr20:25046000-25046800	Enhancers	Right Atrium	heart
18	chr20:25046200-25046800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr20:25046200-25046800	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr20:25046200-25046800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr20:25046200-25046800	Enhancers	Fetal Heart	heart
22	chr20:25046200-25046800	Enhancers	Placenta Amnion	Placenta Amnion
23	chr20:25046200-25047000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr20:25046200-25047400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr20:25046200-25047800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr20:25046400-25047200	Weak transcription	Pancreas	Pancrea
27	chr20:25046400-25047800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr20:25046400-25047800	Weak transcription	Lung	lung
29	chr20:25046400-25047800	Weak transcription	Right Ventricle	heart
30	chr20:25046400-25048000	Weak transcription	Esophagus	oesophagus
31	chr20:25046400-25048000	Weak transcription	Spleen	Spleen
32	chr20:25046400-25057200	Weak transcription	Brain Substantia Nigra	brain
33	chr20:25046600-25046800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
34	chr20:25046600-25046800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
35	chr20:25046600-25046800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
36	chr20:25046600-25046800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr20:25046600-25046800	Flanking Active TSS	Colon Smooth Muscle	Colon
38	chr20:25046600-25046800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
39	chr20:25046600-25046800	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
40	chr20:25046600-25046800	Bivalent Enhancer	Fetal Muscle Leg	muscle
41	chr20:25046600-25046800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr20:25046600-25046800	Bivalent/Poised TSS	A549	lung
43	chr20:25046600-25046800	Bivalent Enhancer	NH-A	brain
44	chr20:25046600-25047200	Enhancers	HepG2	liver
45	chr20:25046600-25052000	Weak transcription	Brain Cingulate Gyrus	brain

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