Variant report

Variant	rs533336
Chromosome Location	chr1:170116586-170116587
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11805430	1.00[YRI][hapmap]
rs471156	1.00[YRI][hapmap]
rs498694	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs501645	1.00[YRI][hapmap]
rs530059	1.00[YRI][hapmap]
rs533987	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv999310	chr1:170065943-170223350	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170114200-170116800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr1:170114200-170117000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:170114600-170116800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:170114600-170117000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:170114800-170116800	Enhancers	Primary T cells from cord blood	blood
6	chr1:170115000-170116600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:170115000-170116600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr1:170115000-170116800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr1:170115000-170116800	Flanking Active TSS	Dnd41	blood
10	chr1:170115400-170119200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:170115600-170117800	Weak transcription	Osteobl	bone
12	chr1:170115800-170116800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr1:170116000-170116600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr1:170116000-170116600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr1:170116200-170117200	Enhancers	Fetal Heart	heart
16	chr1:170116200-170118600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:170116200-170119200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:170116200-170119200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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