Variant report

Variant	rs533347331
Chromosome Location	chr13:95363743-95363744
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr13:95363157-95363769	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr13:95363475-95364128	K562	blood:	n/a	n/a
3	E2F6	chr13:95363260-95363863	A549	lung:	n/a	n/a
4	POLR2A	chr13:95363404-95364029	A549	lung:	n/a	n/a
5	CTCF	chr13:95363536-95363781	GM12878	blood:	n/a	n/a
6	CTCF	chr13:95363332-95363774	H1-hESC	embryonic stem cell:	n/a	n/a
7	E2F6	chr13:95363538-95364009	K562	blood:	n/a	n/a
8	CTCF	chr13:95363293-95363757	NHEK	skin:	n/a	n/a
9	KAP1	chr13:95363193-95364285	HEK293	kidney:	n/a	n/a
10	E2F6	chr13:95363086-95365042	H1-hESC	embryonic stem cell:	n/a	chr13:95364327-95364336 chr13:95364744-95364753 chr13:95364745-95364755 chr13:95364315-95364325 chr13:95364428-95364440
11	CTCF	chr13:95363494-95363747	A549	lung:	n/a	n/a
12	ZNF143	chr13:95363551-95363789	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr13:95363553-95363761	Fibrobl	skin:	n/a	n/a
14	CTCF	chr13:95363533-95363772	GM12892	blood:	n/a	n/a
15	MAX	chr13:95363170-95364360	ECC-1	luminal epithelium:	n/a	chr13:95364328-95364338
16	CTCF	chr13:95363515-95363780	H1-hESC	embryonic stem cell:	n/a	n/a
17	RAD21	chr13:95363458-95363772	HepG2	liver:	n/a	n/a
18	CTCF	chr13:95363525-95363761	GM13977	blood:	n/a	n/a
19	BACH1	chr13:95363239-95363779	H1-hESC	embryonic stem cell:	n/a	n/a
20	RAD21	chr13:95363443-95363754	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr13:95362784-95364277	H1-hESC	embryonic stem cell:	n/a	n/a
22	YY1	chr13:95363515-95363819	GM12878	blood:	n/a	n/a
23	TAF1	chr13:95363430-95363821	H1-hESC	embryonic stem cell:	n/a	n/a
24	MAX	chr13:95363043-95366255	H1-hESC	embryonic stem cell:	n/a	chr13:95364328-95364338 chr13:95365842-95365852 chr13:95364441-95364451
25	GABPA	chr13:95363401-95363792	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr13:95363600-95363750	GM12875	blood:	n/a	n/a
27	CTCF	chr13:95363083-95364212	SK-N-SH	brain:	n/a	n/a
28	E2F6	chr13:95363485-95364052	K562	blood:	n/a	n/a
29	POLR2A	chr13:95363643-95363852	A549	lung:	n/a	n/a
30	CCNT2	chr13:95363432-95363803	K562	blood:	n/a	n/a
31	CTCF	chr13:95363545-95363764	GM12891	blood:	n/a	n/a
32	MAX	chr13:95363136-95365718	A549	lung:	n/a	chr13:95364328-95364338 chr13:95364441-95364451
33	POLR2A	chr13:95363335-95364059	H1-neurons	neurons:	n/a	n/a
34	CTCF	chr13:95363343-95363820	K562	blood:	n/a	n/a
35	ZNF263	chr13:95363302-95366442	HEK293-T-REx	kidney:	n/a	chr13:95365861-95365870 chr13:95364830-95364851 chr13:95365858-95365867 chr13:95364868-95364889 chr13:95364662-95364671 chr13:95365767-95365776
36	CTCF	chr13:95363505-95363773	GM19238	blood:	n/a	n/a
37	POLR2A	chr13:95363662-95363806	A549	lung:	n/a	n/a
38	CTCF	chr13:95363489-95363759	H1-hESC	embryonic stem cell:	n/a	n/a
39	YY1	chr13:95363461-95363919	H1-hESC	embryonic stem cell:	n/a	n/a
40	POLR2A	chr13:95363659-95363837	A549	lung:	n/a	n/a
41	CTCF	chr13:95363490-95363810	IMR90	lung:	n/a	n/a
42	YY1	chr13:95363667-95363828	K562	blood:	n/a	n/a
43	CTCF	chr13:95363571-95363753	ProgFib	skin:	n/a	n/a
44	RAD21	chr13:95363491-95363757	K562	blood:	n/a	n/a
45	BHLHE40	chr13:95363443-95364180	K562	blood:	n/a	n/a
46	ZNF143	chr13:95363608-95363780	K562	blood:	n/a	n/a
47	CTCF	chr13:95363602-95363747	GM10248	blood:	n/a	n/a
48	CTCF	chr13:95363496-95363794	K562	blood:	n/a	n/a
49	MAX	chr13:95363212-95363879	A549	lung:	n/a	n/a
50	CTCF	chr13:95363600-95363750	AG04450	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95357906..95359959-chr13:95361552..95364059,2	MCF-7	breast:
2	chr13:95359884..95364398-chr13:95364758..95367708,4	MCF-7	breast:

Variant related genes	Relation type
SOX21-AS1	TF binding region
ENSG00000227640	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1813549	chr13:95333331-95377127	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1824604	chr13:95357807-95365771	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv826750	chr13:95358502-95368070	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3407787	chr13:95362576-95365124	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1054343	chr13:95362727-95395486	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3446235	chr13:95362851-95366749	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv21011	chr13:95363104-95365838	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv3442696	chr13:95363176-95365724	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv562760	chr13:95363617-95365119	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv562761	chr13:95363617-95365251	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv562762	chr13:95363617-95365381	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv562763	chr13:95363617-95365719	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv1795447	chr13:95363617-95365771	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv1806096	chr13:95363617-95365771	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	esv1838082	chr13:95363617-95365771	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95358800-95366200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:95359000-95368000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:95359200-95366600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:95359600-95366000	Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr13:95359600-95366400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:95360000-95364000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
7	chr13:95361800-95366000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr13:95362200-95366000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr13:95362400-95366200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr13:95362400-95366200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr13:95362400-95366600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
12	chr13:95362400-95366800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
13	chr13:95362600-95364000	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr13:95362600-95364000	Bivalent/Poised TSS	NH-A	brain
15	chr13:95362600-95364800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr13:95362600-95365200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr13:95362600-95366200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr13:95362600-95366200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
19	chr13:95362600-95366400	Active TSS	Brain Substantia Nigra	brain
20	chr13:95362800-95364000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr13:95362800-95364000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:95362800-95364000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr13:95362800-95364000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
24	chr13:95362800-95364000	Active TSS	A549	lung
25	chr13:95362800-95365800	Bivalent Enhancer	Spleen	Spleen
26	chr13:95362800-95366000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
27	chr13:95362800-95366400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
28	chr13:95362800-95366800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
29	chr13:95363000-95364000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr13:95363000-95364600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr13:95363000-95365800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
32	chr13:95363000-95366200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr13:95363000-95366200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
34	chr13:95363000-95366400	Bivalent/Poised TSS	NHEK	skin
35	chr13:95363000-95366600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
36	chr13:95363200-95364000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
37	chr13:95363200-95364000	Flanking Bivalent TSS/Enh	Thymus	Thymus
38	chr13:95363200-95364000	Bivalent/Poised TSS	HSMM	muscle
39	chr13:95363200-95364200	Transcr. at gene 5' and 3'	Right Atrium	heart
40	chr13:95363200-95364400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr13:95363200-95364400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
42	chr13:95363200-95364400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
43	chr13:95363200-95364400	Flanking Bivalent TSS/Enh	HMEC	breast
44	chr13:95363200-95364600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
45	chr13:95363200-95365000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
46	chr13:95363200-95365000	Bivalent Enhancer	Lung	lung
47	chr13:95363200-95365000	Flanking Bivalent TSS/Enh	Ovary	ovary
48	chr13:95363200-95365400	Flanking Bivalent TSS/Enh	Right Ventricle	heart
49	chr13:95363200-95365600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
50	chr13:95363200-95366200	Bivalent Enhancer	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links