Variant report

Variant	rs533376290
Chromosome Location	chr1:220919913-220919914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754270	chr1:220850116-220929155	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv160470	chr1:220919015-220922779	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220906400-220921000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:220908400-220920800	Weak transcription	Pancreas	Pancrea
3	chr1:220915800-220921400	Weak transcription	Gastric	stomach
4	chr1:220916200-220921200	Weak transcription	Lung	lung
5	chr1:220918600-220921200	Weak transcription	Esophagus	oesophagus
6	chr1:220919400-220920600	Enhancers	Fetal Heart	heart
7	chr1:220919400-220920800	Enhancers	Fetal Intestine Large	intestine
8	chr1:220919400-220920800	Enhancers	Fetal Intestine Small	intestine
9	chr1:220919600-220920800	Enhancers	Duodenum Mucosa	Duodenum
10	chr1:220919800-220920600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr1:220919800-220920600	Enhancers	Fetal Muscle Leg	muscle
12	chr1:220919800-220920800	Enhancers	Liver	Liver
13	chr1:220919800-220920800	Enhancers	Fetal Lung	lung
14	chr1:220919800-220920800	Bivalent Enhancer	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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