Variant report

Variant	rs533381346
Chromosome Location	chr3:112894596-112894597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv829677	chr3:112857075-113038987	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1003511	chr3:112858775-112989045	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv877346	chr3:112893640-112938683	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112889000-112896600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:112889200-112898000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:112889400-112898200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:112893000-112894600	Enhancers	Colon Smooth Muscle	Colon
5	chr3:112893200-112894600	Enhancers	Fetal Lung	lung
6	chr3:112893200-112894600	Enhancers	Ovary	ovary
7	chr3:112893200-112894600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr3:112893600-112894600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr3:112893800-112894600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:112893800-112894600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:112893800-112894600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:112893800-112894600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:112893800-112894600	Enhancers	Fetal Stomach	stomach
14	chr3:112893800-112894800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:112894000-112894600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr3:112894000-112894600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:112894200-112894600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr3:112894200-112894600	Enhancers	Fetal Muscle Leg	muscle
19	chr3:112894200-112898200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:112894200-112898400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:112894200-112898600	Weak transcription	Spleen	Spleen
22	chr3:112894200-112899200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr3:112894400-112896400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:112894400-112898400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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