Variant report

Variant	rs533397099
Chromosome Location	chr6:140100212-140100213
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140098817..140100684-chr6:140317042..140318702,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022881	chr6:140098646-140172570	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140086000-140101000	Weak transcription	Left Ventricle	heart
2	chr6:140096200-140100800	Enhancers	K562	blood
3	chr6:140096400-140100400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:140096400-140100400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:140096400-140100800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:140096600-140100400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:140097000-140100600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:140097000-140101000	Enhancers	Rectal Smooth Muscle	rectum
9	chr6:140097200-140100400	Enhancers	Fetal Brain Male	brain
10	chr6:140097400-140100600	Enhancers	Fetal Stomach	stomach
11	chr6:140098000-140100800	Enhancers	Fetal Brain Female	brain
12	chr6:140098600-140100400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:140099000-140102000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:140099200-140100400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:140099200-140100600	Active TSS	Stomach Smooth Muscle	stomach
16	chr6:140099400-140100400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:140099400-140102000	Enhancers	Pancreas	Pancrea
18	chr6:140099600-140100400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:140099600-140100400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:140099600-140100400	Enhancers	Osteobl	bone
21	chr6:140099600-140100800	Enhancers	Colon Smooth Muscle	Colon
22	chr6:140099600-140101000	Weak transcription	Psoas Muscle	Psoas
23	chr6:140100000-140100400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:140100000-140100400	Enhancers	Fetal Lung	lung
25	chr6:140100000-140100400	Enhancers	HSMMtube	muscle
26	chr6:140100000-140100600	Flanking Active TSS	Fetal Heart	heart
27	chr6:140100200-140101600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:140100200-140109400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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