Variant report

Variant	rs533412
Chromosome Location	chr11:94354958-94354959
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94352894..94355627-chr11:94704967..94707555,2	MCF-7	breast:
2	chr11:94354386..94356364-chr11:94503854..94506706,2	K562	blood:

Variant related genes	Relation type
ENSG00000150316	Chromatin interaction
ENSG00000186280	Chromatin interaction

rs_ID	r²[population]
rs13447695	1.00[ASN][1000 genomes]
rs13447703	1.00[ASN][1000 genomes]
rs4480497	1.00[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs533412	SLC36A4	cis	cerebellum	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94325200-94357600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:94341600-94355200	Weak transcription	Ovary	ovary
3	chr11:94341600-94355200	Weak transcription	Pancreas	Pancrea
4	chr11:94341600-94355400	Weak transcription	Gastric	stomach
5	chr11:94347000-94355400	Weak transcription	Brain Substantia Nigra	brain
6	chr11:94347000-94355600	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:94347000-94355800	Weak transcription	NHDF-Ad	bronchial
8	chr11:94347400-94356600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:94347600-94357200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:94347600-94359600	Weak transcription	Adipose Nuclei	Adipose
11	chr11:94347800-94355600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr11:94348000-94355200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:94348200-94358400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:94348600-94355400	Weak transcription	Spleen	Spleen
15	chr11:94349000-94356000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:94349400-94355400	Weak transcription	Primary T cells from cord blood	blood
17	chr11:94349600-94355400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr11:94349600-94357000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:94349800-94355600	Strong transcription	Fetal Intestine Large	intestine
20	chr11:94350200-94358000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:94350200-94358200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:94350600-94355600	Weak transcription	Lung	lung
23	chr11:94351400-94356200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:94352200-94357200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:94353800-94356600	Weak transcription	Fetal Intestine Small	intestine
26	chr11:94354000-94355800	Weak transcription	Brain Anterior Caudate	brain
27	chr11:94354000-94359600	Weak transcription	Aorta	Aorta
28	chr11:94354200-94356000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:94354200-94356200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:94354200-94356400	Weak transcription	Fetal Stomach	stomach
31	chr11:94354200-94356600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:94354200-94359400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr11:94354400-94357400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:94354800-94355000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:94354800-94357200	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links