Variant report

Variant	rs533424500
Chromosome Location	chr2:48637210-48637211
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762252	chr2:48554150-48741093	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv581775	chr2:48619869-48714938	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv518718	chr2:48624007-48650308	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3445438	chr2:48637140-48637410	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48628200-48640000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:48634000-48641400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:48634400-48641800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:48634600-48640200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:48634600-48641400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:48634600-48642200	Weak transcription	Small Intestine	intestine
7	chr2:48635000-48640000	Weak transcription	Fetal Intestine Large	intestine
8	chr2:48635200-48640000	Weak transcription	Fetal Intestine Small	intestine
9	chr2:48635600-48641400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:48636400-48639400	Weak transcription	NHDF-Ad	bronchial
11	chr2:48636400-48640000	Enhancers	Adipose Nuclei	Adipose
12	chr2:48637000-48637600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:48637200-48637800	Enhancers	A549	lung
14	chr2:48637200-48642200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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