Variant report

Variant	rs533442848
Chromosome Location	chr6:147438403-147438404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147437032..147439799-chr6:147479756..147483330,3	K562	blood:

Variant related genes	Relation type
ENSG00000196634	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv522096	chr6:147424880-147443480	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv5524	chr6:147428436-147454371	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv2609330	chr6:147437606-147444943	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv3474303	chr6:147438175-147444589	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv3474304	chr6:147438175-147444589	Active TSS Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv2296134	chr6:147438216-147444616	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv514395	chr6:147438403-147443955	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147434800-147462800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:147437600-147439200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:147438000-147438600	Enhancers	Brain Anterior Caudate	brain
4	chr6:147438000-147439000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:147438000-147439000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:147438000-147439000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr6:147438000-147439200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr6:147438200-147438600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:147438200-147439000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:147438200-147439400	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr6:147438400-147438600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:147438400-147438600	Enhancers	Adipose Nuclei	Adipose
13	chr6:147438400-147438600	Enhancers	Rectal Smooth Muscle	rectum
14	chr6:147438400-147438600	Enhancers	Osteobl	bone
15	chr6:147438400-147439000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:147438400-147439000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:147438400-147439000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:147438400-147439000	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr6:147438400-147439000	Active TSS	NHDF-Ad	bronchial
20	chr6:147438400-147439200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:147438400-147439200	Active TSS	Brain Angular Gyrus	brain
22	chr6:147438400-147439200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:147438400-147439400	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links