Variant report

Variant	rs533488286
Chromosome Location	chr6:4948602-4948603
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4948514..4950542-chr6:5000037..5002807,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv970026	chr6:4948264-4949041	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4933600-4950000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:4938000-4956400	Strong transcription	Primary B cells from peripheral blood	blood
3	chr6:4941200-4949600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:4942200-4957200	Strong transcription	Fetal Intestine Small	intestine
5	chr6:4942400-4956800	Weak transcription	Small Intestine	intestine
6	chr6:4942600-4953800	Weak transcription	Dnd41	blood
7	chr6:4942600-4956200	Strong transcription	Primary B cells from cord blood	blood
8	chr6:4942800-4951200	Weak transcription	Stomach Mucosa	stomach
9	chr6:4942800-4956600	Strong transcription	Primary T cells from cord blood	blood
10	chr6:4943000-4954600	Weak transcription	Fetal Kidney	kidney
11	chr6:4943200-4954000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:4943200-4955800	Weak transcription	Brain Substantia Nigra	brain
13	chr6:4943200-4956000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:4943200-4956800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr6:4943400-4948800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:4943400-4953800	Weak transcription	NH-A	brain
17	chr6:4943400-4954200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:4943400-4956000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:4943400-4956200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:4943400-4956200	Weak transcription	HUVEC	blood vessel
21	chr6:4943400-4957800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:4943600-4950800	Strong transcription	GM12878-XiMat	blood
23	chr6:4943600-4954000	Weak transcription	HMEC	breast
24	chr6:4943600-4955600	Strong transcription	Duodenum Mucosa	Duodenum
25	chr6:4943600-4955600	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr6:4943600-4959600	Weak transcription	NHDF-Ad	bronchial
27	chr6:4943600-4970000	Weak transcription	Psoas Muscle	Psoas
28	chr6:4943800-4948800	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr6:4943800-4951000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:4943800-4953000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr6:4943800-4954000	Weak transcription	HSMM	muscle
32	chr6:4943800-4956600	Strong transcription	Fetal Muscle Trunk	muscle
33	chr6:4943800-4956800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:4943800-4956800	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr6:4944000-4949800	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr6:4944000-4957200	Strong transcription	Fetal Muscle Leg	muscle
37	chr6:4944000-4957400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:4944200-4950200	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:4944200-4950800	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr6:4944200-4955000	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr6:4944200-4955200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:4944400-4950400	Strong transcription	Fetal Intestine Large	intestine
43	chr6:4944400-4950800	Strong transcription	Gastric	stomach
44	chr6:4944400-4954800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:4944400-4954800	Strong transcription	Fetal Stomach	stomach
46	chr6:4944400-4956400	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:4944400-4956600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:4944400-4956600	Strong transcription	Placenta	Placenta
49	chr6:4944400-4956800	Strong transcription	Adipose Nuclei	Adipose
50	chr6:4944600-4948800	Weak transcription	Hela-S3	cervix

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