Variant report

Variant	rs533570623
Chromosome Location	chr1:10627607-10627608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:10619980..10621938-chr1:10626339..10628376,2	MCF-7	breast:
2	chr1:10625304..10627854-chr1:10628405..10630255,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1015079	chr1:10611403-10645176	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1009596	chr1:10626249-10652605	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10589400-10664800	Weak transcription	Aorta	Aorta
2	chr1:10591000-10639400	Weak transcription	Hela-S3	cervix
3	chr1:10591400-10629200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:10602000-10639600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:10603000-10659000	Weak transcription	Primary B cells from cord blood	blood
6	chr1:10605000-10659000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr1:10606000-10638000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:10607600-10636800	Weak transcription	Primary T cells from cord blood	blood
9	chr1:10607600-10636800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:10607600-10641400	Weak transcription	Lung	lung
11	chr1:10616400-10633600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:10616400-10638200	Weak transcription	Esophagus	oesophagus
13	chr1:10622800-10634800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:10623600-10645600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:10624600-10636800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr1:10624800-10628600	Weak transcription	Fetal Intestine Small	intestine
17	chr1:10624800-10629400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:10624800-10629400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr1:10624800-10629600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:10624800-10629600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr1:10624800-10634800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:10624800-10646000	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr1:10626000-10637800	Weak transcription	Psoas Muscle	Psoas
24	chr1:10626400-10637800	Weak transcription	Liver	Liver
25	chr1:10627200-10628000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:10627600-10635600	Weak transcription	Rectal Mucosa Donor 29	rectum

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