Variant report

Variant	rs533587465
Chromosome Location	chr13:51827593-51827594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51825741..51827924-chr13:51832786..51834447,2	MCF-7	breast:
2	chr13:51823005..51824634-chr13:51826907..51829681,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv974015	chr13:51826569-51831493	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51816200-51836600	Weak transcription	Adipose Nuclei	Adipose
2	chr13:51816800-51836000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:51817800-51827600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:51818800-51832800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:51820800-51833000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:51821200-51829600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:51821400-51829600	Weak transcription	Right Atrium	heart
8	chr13:51821400-51833200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr13:51821400-51833800	Weak transcription	Gastric	stomach
10	chr13:51821600-51836200	Weak transcription	Fetal Muscle Leg	muscle
11	chr13:51821600-51839000	Weak transcription	Esophagus	oesophagus
12	chr13:51821600-51845000	Weak transcription	Fetal Brain Male	brain
13	chr13:51821800-51831400	Weak transcription	Fetal Lung	lung
14	chr13:51822200-51833200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr13:51822600-51831000	Enhancers	Fetal Heart	heart
16	chr13:51823400-51827800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr13:51824200-51828200	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr13:51824200-51844000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr13:51824400-51827800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr13:51824400-51836600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr13:51824800-51828000	Strong transcription	H9 Cell Line	embryonic stem cell
22	chr13:51825000-51828000	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr13:51825000-51829000	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr13:51825000-51833000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr13:51825200-51828000	Weak transcription	Right Ventricle	heart
26	chr13:51825200-51832800	Weak transcription	Fetal Thymus	thymus
27	chr13:51825200-51833200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr13:51825400-51828200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr13:51825400-51840600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr13:51825600-51827600	Weak transcription	Colon Smooth Muscle	Colon
31	chr13:51825600-51828000	Genic enhancers	Brain Hippocampus Middle	brain
32	chr13:51825600-51829400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr13:51825800-51828000	Strong transcription	Brain Anterior Caudate	brain
34	chr13:51825800-51828200	Genic enhancers	Brain Substantia Nigra	brain
35	chr13:51826000-51827800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr13:51826000-51833600	Weak transcription	Pancreas	Pancrea
37	chr13:51826400-51829800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr13:51826400-51833000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr13:51826400-51833200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr13:51826400-51833800	Weak transcription	Lung	lung
41	chr13:51826400-51854600	Weak transcription	Aorta	Aorta
42	chr13:51826600-51827600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr13:51826600-51828000	Weak transcription	Left Ventricle	heart
44	chr13:51826600-51829800	Weak transcription	Fetal Stomach	stomach
45	chr13:51826600-51830000	Weak transcription	Brain Germinal Matrix	brain
46	chr13:51826600-51830600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr13:51826600-51832200	Weak transcription	Spleen	Spleen
48	chr13:51826800-51828200	Enhancers	GM12878-XiMat	blood
49	chr13:51826800-51828400	Enhancers	Primary B cells from peripheral blood	blood
50	chr13:51826800-51828600	Enhancers	Monocytes-CD14+_RO01746	blood

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