Variant report

Variant	rs533631387
Chromosome Location	chr1:169004685-169004686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169002947..169004749-chr1:169074616..169077346,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143153	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv548146	chr1:169000109-169006682	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv548147	chr1:169002599-169005084	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1836513	chr1:169002599-169005138	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv548148	chr1:169002599-169005138	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv1837209	chr1:169002599-169005304	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3320797	chr1:169003896-169005512	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv820513	chr1:169004137-169005382	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv825320	chr1:169004137-169005382	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv819267	chr1:169004214-169011821	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3320792	chr1:169004222-169005338	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3320793	chr1:169004278-169005304	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3320791	chr1:169004294-169005254	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3320795	chr1:169004302-169005299	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv825331	chr1:169004326-169005101	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv825342	chr1:169004326-169005322	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv11394	chr1:169004327-169005333	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv3320794	chr1:169004345-169005234	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv825353	chr1:169004358-169005322	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	esv3320798	chr1:169004359-169005233	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv548149	chr1:169004394-169005016	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv548150	chr1:169004394-169005084	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	nsv548151	chr1:169004394-169005138	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv548152	chr1:169004394-169005304	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	nsv825365	chr1:169004438-169005101	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	nsv548153	chr1:169004445-169005084	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	nsv548154	chr1:169004445-169005138	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	nsv548155	chr1:169004467-169005138	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	esv33957	chr1:169004575-169005110	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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