Variant report

Variant	rs533653560
Chromosome Location	chr12:119835576-119835577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3327689	chr12:119834794-119837342	Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3384075	chr12:119834969-119837117	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119834400-119850800	Weak transcription	Right Ventricle	heart
2	chr12:119835200-119836400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr12:119835400-119835600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
4	chr12:119835400-119835600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr12:119835400-119835600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr12:119835400-119835600	Bivalent Enhancer	Pancreatic Islets	Pancreatic Islet
7	chr12:119835400-119835600	Flanking Bivalent TSS/Enh	HSMM	muscle
8	chr12:119835400-119835600	ZNF genes & repeats	K562	blood
9	chr12:119835400-119835600	ZNF genes & repeats	NH-A	brain
10	chr12:119835400-119835600	Flanking Bivalent TSS/Enh	NHEK	skin
11	chr12:119835400-119835800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr12:119835400-119835800	Bivalent Enhancer	Primary T cells from cord blood	blood
13	chr12:119835400-119835800	Bivalent/Poised TSS	GM12878-XiMat	blood
14	chr12:119835400-119835800	Genic enhancers	HSMMtube	muscle
15	chr12:119835400-119835800	Active TSS	HUVEC	blood vessel
16	chr12:119835400-119835800	Active TSS	NHDF-Ad	bronchial
17	chr12:119835400-119835800	Active TSS	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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