Variant report

Variant	rs533656701
Chromosome Location	chr11:71769441-71769442
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71760156..71761786-chr11:71767888..71769776,2	K562	blood:
2	chr11:71769306..71770871-chr11:71783036..71785062,2	MCF-7	breast:
3	chr11:71752130..71754014-chr11:71766857..71769681,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137497	Chromatin interaction
ENSG00000263742	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	esv2494956	chr11:71769240-71770650	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71753200-71772800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:71753200-71773000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:71753400-71769800	Weak transcription	Psoas Muscle	Psoas
4	chr11:71754000-71769600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:71754000-71769600	Weak transcription	NH-A	brain
6	chr11:71754000-71769600	Weak transcription	NHLF	lung
7	chr11:71754000-71769600	Weak transcription	Osteobl	bone
8	chr11:71754000-71771400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:71754000-71772000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:71754200-71769600	Weak transcription	HSMMtube	muscle
11	chr11:71754200-71771000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:71754200-71772800	Weak transcription	Lung	lung
13	chr11:71754200-71777400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:71754200-71777600	Weak transcription	Brain Germinal Matrix	brain
15	chr11:71754200-71777600	Weak transcription	Colonic Mucosa	Colon
16	chr11:71754200-71777800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:71754200-71780200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:71754200-71780400	Weak transcription	Aorta	Aorta
19	chr11:71754200-71789600	Weak transcription	Fetal Brain Female	brain
20	chr11:71754800-71781000	Weak transcription	Fetal Intestine Large	intestine
21	chr11:71755000-71780800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr11:71755200-71780400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:71755400-71783000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr11:71755800-71778000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:71756200-71783200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr11:71756600-71770600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr11:71757000-71783200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr11:71757200-71777600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:71757400-71772800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:71757400-71777800	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:71757800-71769600	Weak transcription	Esophagus	oesophagus
32	chr11:71757800-71776800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:71758400-71771200	Weak transcription	Fetal Stomach	stomach
34	chr11:71759400-71769800	Weak transcription	Right Ventricle	heart
35	chr11:71760000-71772600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:71760000-71777600	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:71760000-71780400	Weak transcription	Left Ventricle	heart
38	chr11:71760200-71771000	Weak transcription	A549	lung
39	chr11:71760400-71769600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:71760400-71771200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:71760400-71771200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr11:71760400-71771200	Weak transcription	Primary T cells from cord blood	blood
43	chr11:71760400-71771200	Weak transcription	Duodenum Mucosa	Duodenum
44	chr11:71760400-71771400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:71760400-71772400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:71760400-71772600	Weak transcription	Primary B cells from cord blood	blood
47	chr11:71760400-71772800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr11:71760400-71772800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:71760400-71773600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:71760400-71776800	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links