Variant report

Variant	rs533671745
Chromosome Location	chr15:41851937-41851938
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41851361..41854178-chr15:42065182..42067599,2	K562	blood:
2	chr15:41850304..41852496-chr15:41951450..41954168,2	MCF-7	breast:
3	chr15:41851029..41853126-chr15:41899971..41902269,2	K562	blood:
4	chr15:41849860..41852803-chr15:41858013..41860929,2	MCF-7	breast:
5	chr15:41847317..41853712-chr15:41951201..41955578,8	K562	blood:
6	chr15:41835713..41840265-chr15:41851401..41853463,4	K562	blood:
7	chr15:41849459..41853162-chr15:41854225..41857161,4	MCF-7	breast:
8	chr15:41784400..41789772-chr15:41847283..41854059,7	K562	blood:
9	chr15:41849370..41852913-chr15:41951069..41953769,6	K562	blood:
10	chr15:41850576..41853126-chr15:41900769..41903357,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137825	Chromatin interaction
ENSG00000103932	Chromatin interaction
ENSG00000137802	Chromatin interaction
ENSG00000174197	Chromatin interaction
ENSG00000092445	Chromatin interaction
ENSG00000260926	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3379660	chr15:41850410-41852608	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	esv3311131	chr15:41851466-41853360	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	esv3311132	chr15:41851466-41853360	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41850000-41852200	Enhancers	Liver	Liver
2	chr15:41850000-41853000	Enhancers	Fetal Heart	heart
3	chr15:41850200-41852200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:41850200-41852600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr15:41850200-41852600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:41850200-41853200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:41850400-41852200	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr15:41850600-41852000	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr15:41850600-41852000	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr15:41850600-41852000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:41850600-41852200	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr15:41850600-41852200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:41850600-41852200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:41850600-41852200	Active TSS	Aorta	Aorta
15	chr15:41850600-41852200	Active TSS	Fetal Brain Female	brain
16	chr15:41850600-41852200	Active TSS	Psoas Muscle	Psoas
17	chr15:41850600-41852400	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr15:41850600-41852600	Active TSS	Brain Angular Gyrus	brain
19	chr15:41850800-41852000	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr15:41850800-41852000	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr15:41850800-41852000	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr15:41850800-41852000	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr15:41850800-41852000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:41850800-41852000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:41850800-41852000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:41850800-41852000	Active TSS	Brain Cingulate Gyrus	brain
27	chr15:41850800-41852000	Active TSS	Colon Smooth Muscle	Colon
28	chr15:41850800-41852000	Active TSS	Fetal Intestine Large	intestine
29	chr15:41850800-41852000	Active TSS	Lung	lung
30	chr15:41850800-41852200	Active TSS	H1 Cell Line	embryonic stem cell
31	chr15:41850800-41852200	Active TSS	Brain Anterior Caudate	brain
32	chr15:41850800-41852200	Active TSS	Ovary	ovary
33	chr15:41850800-41852200	Active TSS	HSMMtube	muscle
34	chr15:41850800-41852200	Active TSS	NHDF-Ad	bronchial
35	chr15:41850800-41852200	Active TSS	NHLF	lung
36	chr15:41850800-41852400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr15:41850800-41852400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:41850800-41852400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr15:41850800-41852400	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr15:41850800-41852400	Active TSS	Brain Substantia Nigra	brain
41	chr15:41850800-41852400	Active TSS	A549	lung
42	chr15:41850800-41852600	Active TSS	H9 Cell Line	embryonic stem cell
43	chr15:41850800-41852600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:41850800-41853000	Active TSS	Fetal Kidney	kidney
45	chr15:41851000-41852000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:41851000-41852000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:41851000-41852000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:41851000-41852000	Active TSS	Brain Hippocampus Middle	brain
49	chr15:41851000-41852000	Active TSS	Right Ventricle	heart
50	chr15:41851000-41852000	Active TSS	Hela-S3	cervix

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