Variant report

Variant	rs533723378
Chromosome Location	chr1:196574428-196574429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv947214	chr1:196573327-196578627	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196558400-196575000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:196564000-196575800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:196570800-196575800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:196571600-196574800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:196572600-196575800	Weak transcription	Fetal Kidney	kidney
6	chr1:196573400-196576600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr1:196573400-196577000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:196574000-196575000	Flanking Active TSS	Liver	Liver
9	chr1:196574200-196574600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:196574200-196574600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr1:196574200-196574600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:196574200-196574800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:196574200-196574800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:196574200-196575400	Enhancers	Ovary	ovary
15	chr1:196574400-196574800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr1:196574400-196574800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr1:196574400-196574800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr1:196574400-196574800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr1:196574400-196575200	Active TSS	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links