Variant report

Variant	rs533741622
Chromosome Location	chr2:153252088-153252089
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1005012	chr2:153206764-153273886	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3693436	chr2:153219836-153479857	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv875291	chr2:153251742-153339823	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153229200-153252400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:153233800-153255400	Weak transcription	NHEK	skin
3	chr2:153237400-153255400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:153237400-153255400	Weak transcription	HMEC	breast
5	chr2:153238600-153258600	Weak transcription	Left Ventricle	heart
6	chr2:153241200-153255400	Weak transcription	Pancreas	Pancrea
7	chr2:153242800-153252600	Weak transcription	A549	lung
8	chr2:153243400-153252600	Weak transcription	Fetal Brain Female	brain
9	chr2:153246600-153266600	Enhancers	Brain Substantia Nigra	brain
10	chr2:153247000-153257800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:153247200-153255400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:153247400-153252600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:153247400-153252600	Weak transcription	Fetal Stomach	stomach
14	chr2:153247400-153255400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:153247400-153277600	Weak transcription	Fetal Intestine Small	intestine
16	chr2:153247800-153258800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr2:153248800-153253600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:153249000-153252400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:153249000-153252600	Enhancers	Brain Cingulate Gyrus	brain
20	chr2:153249200-153252600	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr2:153249200-153253800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr2:153249200-153254200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr2:153249400-153253200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:153249600-153255400	Weak transcription	Gastric	stomach
25	chr2:153249600-153255400	Weak transcription	Lung	lung
26	chr2:153249600-153259000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr2:153250000-153252400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:153250000-153253200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:153250000-153254200	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr2:153250200-153252600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr2:153250400-153257600	Weak transcription	HepG2	liver
32	chr2:153250600-153252400	Weak transcription	Fetal Muscle Leg	muscle
33	chr2:153250600-153252600	Enhancers	Brain Hippocampus Middle	brain
34	chr2:153250800-153253600	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr2:153250800-153258800	Weak transcription	Small Intestine	intestine
36	chr2:153251200-153252200	Enhancers	Brain Angular Gyrus	brain
37	chr2:153251200-153252200	Enhancers	Rectal Smooth Muscle	rectum
38	chr2:153251200-153252400	Enhancers	Muscle Satellite Cultured Cells	--
39	chr2:153251200-153252600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr2:153251200-153253800	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr2:153251200-153254000	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr2:153251400-153252200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr2:153251400-153252200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr2:153251400-153252400	Enhancers	NH-A	brain
45	chr2:153251400-153252800	Enhancers	Colon Smooth Muscle	Colon
46	chr2:153251400-153253600	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr2:153251400-153253800	Enhancers	Fetal Brain Male	brain
48	chr2:153251600-153252200	Weak transcription	Adipose Nuclei	Adipose
49	chr2:153251600-153252200	Enhancers	Ovary	ovary
50	chr2:153251600-153252400	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links