Variant report

Variant	rs533776260
Chromosome Location	chr7:18936095-18936096
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2756248	chr7:18911960-18977760	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1030062	chr7:18915874-18943409	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv887815	chr7:18931219-18958942	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv887816	chr7:18935310-18959138	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv523468	chr7:18935767-18939200	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18903000-18940000	Weak transcription	Aorta	Aorta
2	chr7:18931200-18943400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:18931400-18940000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:18934400-18936600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:18934400-18936800	Enhancers	NHLF	lung
6	chr7:18934800-18936200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:18934800-18936200	Enhancers	A549	lung
8	chr7:18934800-18936200	Enhancers	Hela-S3	cervix
9	chr7:18934800-18936600	Enhancers	HSMM	muscle
10	chr7:18934800-18936600	Enhancers	HUVEC	blood vessel
11	chr7:18935200-18936400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:18935200-18936600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:18935200-18936600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:18935200-18936800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr7:18935400-18936400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr7:18935400-18936600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr7:18935400-18936600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr7:18935400-18937400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:18935600-18936200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:18935600-18936200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr7:18935600-18936200	Enhancers	Fetal Kidney	kidney
22	chr7:18935600-18936200	Enhancers	Osteobl	bone
23	chr7:18935600-18936400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:18935600-18936600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr7:18935600-18936600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:18935600-18936600	Enhancers	HMEC	breast
27	chr7:18935600-18936600	Enhancers	NH-A	brain
28	chr7:18935600-18936600	Enhancers	NHDF-Ad	bronchial
29	chr7:18935600-18936600	Enhancers	NHEK	skin
30	chr7:18935600-18940000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr7:18935800-18936200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:18935800-18936200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:18936000-18936600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links