Variant report

Variant	rs533779594
Chromosome Location	chr1:165551504-165551505
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr1:165551377-165551526	MCF-7	breast:	n/a	n/a
2	POLR2A	chr1:165551240-165551517	MCF-7	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:165551490-165551540	GM12892	blood:	n/a
2	chr1:165551490-165551540	BJ	skin:	n/a
3	chr1:165551490-165551540	HMEC	breast:	n/a
4	chr1:165551490-165551540	AG09309	skin:	n/a
5	chr1:165551490-165551540	Hepatocyte	liver:	n/a
6	chr1:165551490-165551540	AoSMC	blood vessel:	n/a
7	chr1:165551490-165551540	HRPEpiC	eye:	n/a
8	chr1:165551490-165551540	CMK	blood:	n/a
9	chr1:165551490-165551540	AG10803	skin:	n/a
10	chr1:165551490-165551540	T-47D	breast:	n/a
11	chr1:165551490-165551540	HNPCEpiC	eye:	n/a
12	chr1:165551490-165551540	IMR90	lung:	fetal
13	chr1:165551490-165551540	GM12878	blood:	n/a
14	chr1:165551490-165551540	NHBE	bronchial:	n/a
15	chr1:165551490-165551540	HIPEpiC	eye:	n/a
16	chr1:165551490-165551540	ProgFib	skin:	n/a
17	chr1:165551490-165551540	HCM	heart:	n/a
18	chr1:165551490-165551540	SAEC	small airway:	n/a
19	chr1:165551490-165551540	SKMC	muscle:	n/a
20	chr1:165551490-165551540	SK-N-SH	brain:	n/a
21	chr1:165551490-165551540	Jurkat	blood:	n/a
22	chr1:165551490-165551540	PANC-1	pancreas:	n/a
23	chr1:165551490-165551540	NHDF-neo	bronchial:	n/a
24	chr1:165551490-165551540	HCT-116	colon:	n/a
25	chr1:165551490-165551540	GM19239	blood:	n/a
26	chr1:165551490-165551540	PrEC	prostate:	n/a
27	chr1:165551490-165551540	MCF-7	breast:	n/a
28	chr1:165551490-165551540	HAEpiC	amniotic membrane:	n/a
29	chr1:165551490-165551540	HEEpiC	esophagus:	n/a
30	chr1:165551490-165551540	SK-N-SH_RA	brain:	n/a
31	chr1:165551490-165551540	HL-60	blood:	n/a
32	chr1:165551490-165551540	HCF	heart:	n/a
33	chr1:165551490-165551540	NB4	blood:	n/a
34	chr1:165551490-165551540	HPAEpiC	pulmonary alveolar:	n/a
35	chr1:165551490-165551540	RPTEC	kidney:	n/a
36	chr1:165551490-165551540	LNCaP	prostate:	n/a
37	chr1:165551490-165551540	ECC-1	luminal epithelium:	n/a
38	chr1:165551490-165551540	BE2_C	brain:	n/a
39	chr1:165551490-165551540	NH-A	brain:	n/a
40	chr1:165551490-165551540	K562	blood:	n/a
41	chr1:165551490-165551540	PFSK-1	brain:	n/a
42	chr1:165551490-165551540	HRCEpiC	kidney:	n/a
43	chr1:165551490-165551540	AG04449	skin:	fetal
44	chr1:165551490-165551540	MCF10A-Er-Src	breast:	n/a
45	chr1:165551490-165551540	HCPEpiC	choroid plexus:	n/a
46	chr1:165551490-165551540	NT2-D1	testis:	n/a
47	chr1:165551490-165551540	ovcar-3	ovarian:	n/a
48	chr1:165551490-165551540	U87	brain:	n/a
49	chr1:165551490-165551540	HUVEC	blood vessel:	n/a
50	chr1:165551490-165551540	Hela-S3	cervix:	n/a

No data

Variant related genes	Relation type
ENSG00000237463	TF binding region
ENSG00000237463	CpG island

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv946479	chr1:165549846-165553079	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3421023	chr1:165550778-165553601	Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3402425	chr1:165550853-165553701	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165547400-165566800	Weak transcription	Psoas Muscle	Psoas
2	chr1:165549600-165551600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:165549600-165551600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:165549800-165551600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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