Variant report

Variant	rs533780439
Chromosome Location	chr15:77224420-77224421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:77195051..77197848-chr15:77221697..77224553,2	MCF-7	breast:
2	chr15:77222222..77225627-chr15:77232795..77236028,3	K562	blood:
3	chr15:77194744..77199863-chr15:77220881..77225601,7	MCF-7	breast:
4	chr15:77196182..77198169-chr15:77222869..77226186,3	K562	blood:
5	chr15:77196272..77198559-chr15:77223364..77225357,2	K562	blood:
6	chr15:77224127..77226874-chr15:77232246..77234714,2	K562	blood:
7	chr15:76584744..76587703-chr15:77223601..77225703,2	K562	blood:
8	chr15:77223524..77226032-chr15:77234679..77237040,2	MCF-7	breast:
9	chr12:120729471..120731046-chr15:77223645..77226365,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000140386	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000117906	Chromatin interaction
ENSG00000140374	Chromatin interaction
ENSG00000200795	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv3351542	chr15:77223247-77225445	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77223200-77224600	Active TSS	HSMMtube	muscle
2	chr15:77223200-77225000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:77223200-77225000	Active TSS	Colonic Mucosa	Colon
4	chr15:77223200-77225200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr15:77223400-77224600	Active TSS	Placenta	Placenta
6	chr15:77223400-77224600	Active TSS	Fetal Thymus	thymus
7	chr15:77223400-77224600	Active TSS	Stomach Smooth Muscle	stomach
8	chr15:77223400-77224800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:77223400-77224800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:77223400-77224800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr15:77223400-77224800	Active TSS	Fetal Brain Female	brain
12	chr15:77223400-77224800	Active TSS	Thymus	Thymus
13	chr15:77223400-77225000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:77223400-77225000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:77223400-77225000	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr15:77223400-77225000	Active TSS	Fetal Muscle Trunk	muscle
17	chr15:77223400-77225000	Active TSS	Right Ventricle	heart
18	chr15:77223400-77225000	Active TSS	Stomach Mucosa	stomach
19	chr15:77223400-77225200	Active TSS	H9 Cell Line	embryonic stem cell
20	chr15:77223400-77225200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:77223400-77225200	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr15:77223400-77225200	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr15:77223400-77225200	Active TSS	Brain Germinal Matrix	brain
24	chr15:77223400-77225200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:77223400-77225800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr15:77223600-77224600	Active TSS	Primary T cells from cord blood	blood
27	chr15:77223600-77224600	Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr15:77223600-77224600	Active TSS	Primary T killer memory cells from peripheral blood	blood
29	chr15:77223600-77224600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:77223600-77224600	Active TSS	Duodenum Mucosa	Duodenum
31	chr15:77223600-77224600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr15:77223600-77224600	Active TSS	Fetal Lung	lung
33	chr15:77223600-77224600	Active TSS	Fetal Muscle Leg	muscle
34	chr15:77223600-77224600	Active TSS	Pancreas	Pancrea
35	chr15:77223600-77224600	Active TSS	Spleen	Spleen
36	chr15:77223600-77224600	Active TSS	Osteobl	bone
37	chr15:77223600-77224800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:77223600-77224800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr15:77223600-77224800	Active TSS	Brain Angular Gyrus	brain
40	chr15:77223600-77224800	Active TSS	Brain Anterior Caudate	brain
41	chr15:77223600-77224800	Active TSS	Brain Cingulate Gyrus	brain
42	chr15:77223600-77224800	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr15:77223600-77224800	Active TSS	Colon Smooth Muscle	Colon
44	chr15:77223600-77224800	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr15:77223600-77224800	Active TSS	Fetal Intestine Small	intestine
46	chr15:77223600-77224800	Active TSS	Gastric	stomach
47	chr15:77223600-77224800	Active TSS	Lung	lung
48	chr15:77223600-77224800	Active TSS	Sigmoid Colon	Sigmoid Colon
49	chr15:77223600-77224800	Active TSS	HSMM	muscle
50	chr15:77223600-77225000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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