The 2.0 version of rSNPBase

Variant report

Variant rs533830406
Chromosome Location chr3:69241519-69241520
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:69218400-69247400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr3:69218400-69247800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
3 chr3:69222800-69245400 Strong transcription Primary neutrophils fromperipheralblood blood
4 chr3:69226800-69246800 Strong transcription Monocytes-CD14+_RO01746 blood
5 chr3:69228400-69246800 Weak transcription Primary T cells from cord blood blood
6 chr3:69228600-69248600 Weak transcription Stomach Smooth Muscle stomach
7 chr3:69228800-69245800 Strong transcription Primary T helper cells PMA-I stimulated --
8 chr3:69228800-69246000 Strong transcription Primary T regulatory cells fromperipheralblood blood
9 chr3:69229000-69248400 Weak transcription Primary B cells from cord blood blood
10 chr3:69229200-69246000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
11 chr3:69229600-69248200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr3:69230600-69243000 Weak transcription Fetal Kidney kidney
13 chr3:69230600-69248600 Weak transcription Aorta Aorta
14 chr3:69230600-69248600 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr3:69230800-69248600 Weak transcription Ovary ovary
16 chr3:69231000-69243600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
17 chr3:69231200-69246800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
18 chr3:69231200-69248600 Weak transcription Left Ventricle heart
19 chr3:69231200-69248600 Weak transcription Small Intestine intestine
20 chr3:69231400-69246400 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr3:69231400-69246600 Weak transcription Fetal Brain Male brain
22 chr3:69231400-69248400 Weak transcription Rectal Smooth Muscle rectum
23 chr3:69231400-69249600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr3:69231600-69248600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr3:69231800-69249600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr3:69232000-69247400 Weak transcription Hela-S3 cervix
27 chr3:69232000-69248800 Weak transcription HUES6 Cell Line embryonic stem cell
28 chr3:69232000-69249400 Weak transcription iPS-20b Cell Line embryonic stem cell
29 chr3:69232000-69275600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr3:69232200-69248600 Weak transcription Placenta Amnion Placenta Amnion
31 chr3:69232400-69246600 Strong transcription Placenta Placenta
32 chr3:69232400-69247400 Weak transcription Stomach Mucosa stomach
33 chr3:69232400-69248400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr3:69232400-69248400 Weak transcription Brain Angular Gyrus brain
35 chr3:69232600-69242800 Weak transcription HSMMtube muscle
36 chr3:69232600-69246000 Weak transcription iPS-15b Cell Line embryonic stem cell
37 chr3:69232800-69249200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr3:69233200-69247200 Strong transcription Breast Myoepithelial Primary Cells Breast
39 chr3:69233200-69247800 Strong transcription Fetal Intestine Large intestine
40 chr3:69233400-69242800 Strong transcription HUVEC blood vessel
41 chr3:69233400-69246600 Strong transcription Skeletal Muscle Female skeletal muscle
42 chr3:69233600-69241600 Strong transcription Adipose Nuclei Adipose
43 chr3:69233600-69247400 Strong transcription Rectal Mucosa Donor 31 rectum
44 chr3:69233600-69247800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr3:69234000-69246600 Strong transcription Rectal Mucosa Donor 29 rectum
46 chr3:69234000-69248200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr3:69234200-69243800 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr3:69235800-69246600 Strong transcription Duodenum Mucosa Duodenum
49 chr3:69236400-69248400 Weak transcription HepG2 liver
50 chr3:69237000-69246800 Strong transcription Liver Liver

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Last update: Aug 31, 2015