Variant report

Variant	rs533836157
Chromosome Location	chr14:21341433-21341434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNASE1-1	chr14:21341079-21342995	XLOC_010966
2	lnc-RNASE1-1	chr14:21341350-21341529	ENSG00000259130

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758349	chr14:21216108-21471614	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759972	chr14:21216108-21471614	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv427936	chr14:21216108-21531783	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
4	nsv428293	chr14:21216108-21531783	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	nsv832740	chr14:21332060-21545052	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1044554	chr14:21334087-21456092	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv1036728	chr14:21338459-21409969	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv470622	chr14:21338824-21469151	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	nsv563847	chr14:21338824-21469151	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
10	nsv1045451	chr14:21340639-21402584	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21337200-21341600	Weak transcription	Brain Substantia Nigra	brain
2	chr14:21337600-21341600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:21338800-21341600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:21341200-21341600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr14:21341200-21342200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr14:21341200-21342200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr14:21341200-21342200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr14:21341200-21342600	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr14:21341200-21342600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:21341200-21343200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr14:21341400-21341600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr14:21341400-21341600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr14:21341400-21341600	Enhancers	Brain Cingulate Gyrus	brain
14	chr14:21341400-21341600	Enhancers	Dnd41	blood
15	chr14:21341400-21341800	Enhancers	Primary T cells from cord blood	blood
16	chr14:21341400-21342200	Active TSS	H1 Cell Line	embryonic stem cell
17	chr14:21341400-21342200	Enhancers	Primary B cells from peripheral blood	blood
18	chr14:21341400-21342200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr14:21341400-21342200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr14:21341400-21342200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:21341400-21342400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
22	chr14:21341400-21342400	Enhancers	Primary hematopoietic stem cells	blood
23	chr14:21341400-21342400	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr14:21341400-21342400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:21341400-21342400	Enhancers	Brain Anterior Caudate	brain
26	chr14:21341400-21342600	Enhancers	Primary B cells from cord blood	blood
27	chr14:21341400-21342600	Enhancers	Spleen	Spleen
28	chr14:21341400-21342600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links