The 2.0 version of rSNPBase

Variant report

Variant rs533855400
Chromosome Location chr13:30800543-30800544
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:30765600-30807000 Weak transcription Gastric stomach
2 chr13:30766400-30804400 Weak transcription Duodenum Mucosa Duodenum
3 chr13:30770600-30803200 Weak transcription HUES48 Cell Line embryonic stem cell
4 chr13:30774400-30812600 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr13:30774600-30802800 Weak transcription Lung lung
6 chr13:30774600-30805200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr13:30775000-30803000 Weak transcription Esophagus oesophagus
8 chr13:30780200-30801000 Weak transcription Pancreas Pancrea
9 chr13:30790000-30807000 Weak transcription Small Intestine intestine
10 chr13:30791000-30802600 Weak transcription Brain Cingulate Gyrus brain
11 chr13:30791000-30802600 Weak transcription Skeletal Muscle Female skeletal muscle
12 chr13:30791000-30807200 Weak transcription H9 Cell Line embryonic stem cell
13 chr13:30791000-30808800 Weak transcription Brain Hippocampus Middle brain
14 chr13:30791000-30811600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
15 chr13:30791000-30831400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr13:30792400-30802600 Weak transcription Primary T killer memory cells from peripheral blood blood
17 chr13:30794000-30801200 Weak transcription Colon Smooth Muscle Colon
18 chr13:30795800-30805600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr13:30796400-30801600 ZNF genes & repeats Dnd41 blood
20 chr13:30796600-30807000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr13:30796600-30808600 Weak transcription Brain Substantia Nigra brain
22 chr13:30796800-30802800 Weak transcription Fetal Intestine Large intestine
23 chr13:30796800-30802800 Weak transcription K562 blood
24 chr13:30796800-30831400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
25 chr13:30797000-30800800 Weak transcription HUVEC blood vessel
26 chr13:30797000-30808600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
27 chr13:30797000-30823400 Weak transcription HUES6 Cell Line embryonic stem cell
28 chr13:30797200-30802800 Weak transcription Fetal Intestine Small intestine
29 chr13:30797400-30802800 Weak transcription Fetal Stomach stomach
30 chr13:30797800-30814800 Weak transcription Placenta Placenta
31 chr13:30798800-30803400 Strong transcription Muscle Satellite Cultured Cells --
32 chr13:30798800-30804400 Weak transcription Primary monocytes fromperipheralblood blood
33 chr13:30798800-30810800 Strong transcription Fetal Thymus thymus
34 chr13:30799000-30800800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
35 chr13:30799000-30805600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr13:30799200-30800800 Genic enhancers Osteobl bone
37 chr13:30799200-30802800 Weak transcription Rectal Smooth Muscle rectum
38 chr13:30799200-30804000 Weak transcription iPS-18 Cell Line embryonic stem cell
39 chr13:30799200-30805600 Strong transcription Breast Myoepithelial Primary Cells Breast
40 chr13:30799200-30805600 Strong transcription Primary T regulatory cells fromperipheralblood blood
41 chr13:30799200-30805600 Strong transcription Liver Liver
42 chr13:30799200-30805600 Strong transcription Monocytes-CD14+_RO01746 blood
43 chr13:30799200-30811800 Weak transcription H1 Cell Line embryonic stem cell
44 chr13:30799200-30831400 Weak transcription Aorta Aorta
45 chr13:30799400-30800600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
46 chr13:30799400-30800600 Weak transcription Brain Inferior Temporal Lobe brain
47 chr13:30799400-30800600 Weak transcription Fetal Muscle Trunk muscle
48 chr13:30799400-30800600 Weak transcription Fetal Muscle Leg muscle
49 chr13:30799400-30800800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr13:30799400-30801800 Strong transcription Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015