Variant report

Variant	rs533874359
Chromosome Location	chr6:144069209-144069210
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144063490..144065500-chr6:144068197..144069773,2	K562	blood:
2	chr6:143831191..143834659-chr6:144066379..144069896,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000001036	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv5513	chr6:144068006-144102028	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144038600-144075400	Weak transcription	NHEK	skin
2	chr6:144046200-144074600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:144053400-144076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:144053600-144073600	Weak transcription	Osteobl	bone
5	chr6:144053600-144075400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:144053600-144075600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:144053800-144079800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:144056200-144080200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:144059800-144077000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:144060200-144078400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:144060600-144074600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:144060800-144074400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:144061000-144079800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:144061000-144086600	Weak transcription	Primary T cells from cord blood	blood
15	chr6:144063000-144075400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:144063400-144070600	Enhancers	H9 Cell Line	embryonic stem cell
17	chr6:144063400-144071400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:144063600-144076600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:144063800-144075000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:144063800-144086400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:144064400-144071400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr6:144064400-144074400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:144064600-144076800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr6:144064800-144071000	Enhancers	Fetal Intestine Large	intestine
25	chr6:144064800-144075400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:144064800-144086600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:144065600-144069800	Enhancers	Placenta	Placenta
28	chr6:144066400-144076400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:144066600-144075400	Weak transcription	Liver	Liver
30	chr6:144066600-144081000	Weak transcription	Esophagus	oesophagus
31	chr6:144066800-144080600	Weak transcription	Spleen	Spleen
32	chr6:144067000-144075800	Weak transcription	HUVEC	blood vessel
33	chr6:144067000-144076400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:144067000-144077200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:144067000-144081000	Weak transcription	Brain Angular Gyrus	brain
36	chr6:144067000-144083000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:144067200-144070000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:144067200-144070000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr6:144067200-144073800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:144067400-144070000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:144067400-144071400	Enhancers	Fetal Intestine Small	intestine
42	chr6:144067400-144072200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:144067400-144076400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:144067400-144078400	Weak transcription	NHDF-Ad	bronchial
45	chr6:144067600-144087400	Weak transcription	NH-A	brain
46	chr6:144067800-144069400	Enhancers	Ovary	ovary
47	chr6:144067800-144070000	Enhancers	Fetal Lung	lung
48	chr6:144067800-144072000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr6:144067800-144072800	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr6:144067800-144072800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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