Variant report

Variant	rs533875009
Chromosome Location	chr7:33404560-33404561
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv511958	chr7:33402220-33405040	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv3353498	chr7:33402877-33404875	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
7	esv2633060	chr7:33403180-33404751	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:33362200-33404800	Weak transcription	Fetal Lung	lung
3	chr7:33377600-33404800	Weak transcription	Left Ventricle	heart
4	chr7:33380600-33404800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:33381400-33407200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:33384000-33425400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:33385800-33407000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr7:33386000-33407400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:33386400-33408200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:33387000-33425200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr7:33388800-33404800	Weak transcription	Lung	lung
12	chr7:33389000-33437400	Weak transcription	Liver	Liver
13	chr7:33391600-33407400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:33392600-33423000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:33393600-33419600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:33394200-33419400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr7:33394200-33419600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:33394400-33427800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:33395000-33407400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:33395400-33405000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:33396600-33420000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:33396600-33422000	Weak transcription	Small Intestine	intestine
23	chr7:33402600-33419600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr7:33403000-33427400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr7:33403200-33404800	Weak transcription	Fetal Muscle Leg	muscle
26	chr7:33403400-33405000	Weak transcription	Brain Anterior Caudate	brain
27	chr7:33403400-33437800	Weak transcription	Brain Substantia Nigra	brain
28	chr7:33403800-33419600	Weak transcription	Brain Angular Gyrus	brain
29	chr7:33403800-33430400	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:33404000-33419800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:33404000-33433000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:33404200-33407400	Weak transcription	Fetal Brain Male	brain
33	chr7:33404400-33404600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr7:33404400-33405200	ZNF genes & repeats	Aorta	Aorta
35	chr7:33404400-33405200	ZNF genes & repeats	Colon Smooth Muscle	Colon
36	chr7:33404400-33405200	Strong transcription	Ovary	ovary
37	chr7:33404400-33405400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
38	chr7:33404400-33406000	ZNF genes & repeats	Fetal Stomach	stomach

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