Variant report

Variant	rs533915442
Chromosome Location	chr9:100807625-100807626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100679327..100688755-chr9:100804829..100810921,12	K562	blood:
2	chr9:100743537..100749297-chr9:100805473..100813198,12	K562	blood:
3	chr9:100799367..100802266-chr9:100805470..100807708,2	MCF-7	breast:
4	chr9:100806291..100808002-chr9:100817271..100819268,2	MCF-7	breast:
5	chr9:100458298..100461061-chr9:100806544..100809239,2	K562	blood:
6	chr9:100743649..100747393-chr9:100806371..100809307,4	K562	blood:
7	chr9:100686261..100688755-chr9:100806613..100809213,2	K562	blood:
8	chr9:100806589..100809484-chr9:100810464..100812482,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136936	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv3483159	chr9:100806167-100814815	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	esv3483160	chr9:100806167-100814815	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100802400-100809600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:100804800-100807800	Enhancers	Primary B cells from peripheral blood	blood
3	chr9:100806000-100808000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:100807000-100807800	Enhancers	Primary T cells fromperipheralblood	blood
5	chr9:100807000-100807800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:100807000-100807800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:100807200-100807800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:100807200-100807800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr9:100807200-100807800	Enhancers	Fetal Thymus	thymus
10	chr9:100807200-100808200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr9:100807400-100807800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr9:100807400-100807800	Flanking Active TSS	HepG2	liver
13	chr9:100807400-100807800	Flanking Active TSS	K562	blood
14	chr9:100807400-100808000	Active TSS	Primary hematopoietic stem cells	blood
15	chr9:100807400-100808000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:100807400-100808000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr9:100807400-100808600	Flanking Active TSS	Primary T cells from cord blood	blood
18	chr9:100807400-100808800	Active TSS	Duodenum Mucosa	Duodenum
19	chr9:100807400-100808800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr9:100807400-100810000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:100807600-100807800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr9:100807600-100807800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr9:100807600-100807800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr9:100807600-100808000	Active TSS	Primary B cells from cord blood	blood
25	chr9:100807600-100808000	Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr9:100807600-100808400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr9:100807600-100808400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr9:100807600-100808400	Active TSS	Adipose Nuclei	Adipose
29	chr9:100807600-100808600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr9:100807600-100808600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr9:100807600-100808600	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr9:100807600-100808600	Active TSS	Dnd41	blood
33	chr9:100807600-100808600	Active TSS	HSMMtube	muscle
34	chr9:100807600-100808800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr9:100807600-100809000	Active TSS	HSMM	muscle
36	chr9:100807600-100809800	Active TSS	GM12878-XiMat	blood
37	chr9:100807600-100818400	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links