Variant report

Variant	rs533924260
Chromosome Location	chr11:85345796-85345797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85337741..85343545-chr11:85345780..85354384,11	MCF-7	breast:
2	chr11:85344282..85346606-chr11:85367280..85369213,2	MCF-7	breast:
3	chr11:85338790..85340950-chr11:85345687..85347390,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171204	Chromatin interaction
ENSG00000150672	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	esv3463608	chr11:85345255-85346759	Strong transcription Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3463620	chr11:85345255-85346759	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85340200-85348400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:85340200-85351800	Weak transcription	Gastric	stomach
3	chr11:85340200-85352400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:85340400-85349400	Weak transcription	Pancreas	Pancrea
5	chr11:85340400-85351000	Weak transcription	Esophagus	oesophagus
6	chr11:85340600-85345800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:85340600-85347600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:85340600-85350000	Weak transcription	Stomach Mucosa	stomach
9	chr11:85340600-85352800	Weak transcription	Fetal Brain Male	brain
10	chr11:85340600-85358200	Weak transcription	Aorta	Aorta
11	chr11:85340800-85350000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:85340800-85358200	Weak transcription	Fetal Stomach	stomach
13	chr11:85340800-85358200	Weak transcription	Right Ventricle	heart
14	chr11:85340800-85358200	Weak transcription	HSMMtube	muscle
15	chr11:85341000-85351600	Weak transcription	Thymus	Thymus
16	chr11:85341200-85348000	Weak transcription	Fetal Brain Female	brain
17	chr11:85341200-85354400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:85341200-85358000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:85341200-85358000	Weak transcription	NHLF	lung
20	chr11:85341200-85358200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:85341200-85358200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:85341200-85358200	Weak transcription	Spleen	Spleen
23	chr11:85341200-85358400	Weak transcription	Small Intestine	intestine
24	chr11:85341400-85354200	Weak transcription	Fetal Intestine Small	intestine
25	chr11:85341600-85346400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:85341600-85347000	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:85341800-85348800	Strong transcription	Liver	Liver
28	chr11:85341800-85353000	Weak transcription	Fetal Heart	heart
29	chr11:85342000-85347600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:85342000-85348400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:85342000-85349200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:85342200-85358200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:85342400-85352600	Weak transcription	Psoas Muscle	Psoas
34	chr11:85342800-85347000	Weak transcription	HSMM	muscle
35	chr11:85342800-85352600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:85343000-85345800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:85343000-85349400	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:85344400-85348800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:85344400-85349400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:85344400-85350400	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr11:85344600-85346000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr11:85344600-85346600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
43	chr11:85344600-85347800	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr11:85344600-85348800	Strong transcription	HUVEC	blood vessel
45	chr11:85344600-85349400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:85344600-85351000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr11:85344800-85347200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr11:85344800-85348200	Strong transcription	NHDF-Ad	bronchial
49	chr11:85344800-85348800	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr11:85344800-85348800	Strong transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links