Variant report

Variant	rs533941681
Chromosome Location	chr10:91295873-91295874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:91294949-91295991	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr10:91294689-91295989	H1-hESC	embryonic stem cell:	n/a	chr10:91295386-91295395 chr10:91295424-91295433
3	E2F6	chr10:91294820-91295955	H1-hESC	embryonic stem cell:	n/a	chr10:91295386-91295395 chr10:91295424-91295433
4	TAF1	chr10:91295414-91295899	H1-hESC	embryonic stem cell:	n/a	n/a
5	ZNF263	chr10:91295574-91295957	HEK293-T-REx	kidney:	n/a	n/a
6	RAD21	chr10:91295421-91295891	H1-hESC	embryonic stem cell:	n/a	n/a
7	CEBPB	chr10:91295652-91295970	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr10:91295079-91295878	H1-hESC	embryonic stem cell:	n/a	n/a
9	CHD2	chr10:91295642-91295914	H1-hESC	embryonic stem cell:	n/a	chr10:91295780-91295790

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:91295855-91295905	LNCaP	prostate:	n/a
2	chr10:91295855-91295905	HAEpiC	amniotic membrane:	n/a
3	chr10:91295855-91295905	GM12892	blood:	n/a
4	chr10:91295855-91295905	MCF-7	breast:	n/a
5	chr10:91295855-91295905	AG09309	skin:	n/a
6	chr10:91295855-91295905	HIPEpiC	eye:	n/a
7	chr10:91295855-91295905	Hepatocyte	liver:	n/a
8	chr10:91295855-91295905	MCF10A-Er-Src	breast:	n/a
9	chr10:91295855-91295905	NB4	blood:	n/a
10	chr10:91295855-91295905	HCT-116	colon:	n/a
11	chr10:91295855-91295905	SK-N-MC	brain:	n/a
12	chr10:91295855-91295905	SAEC	small airway:	n/a
13	chr10:91295855-91295905	ovcar-3	ovarian:	n/a
14	chr10:91295855-91295905	Caco-2	colon:	n/a
15	chr10:91295855-91295905	GM12891	blood:	n/a
16	chr10:91295855-91295905	PANC-1	pancreas:	n/a
17	chr10:91295855-91295905	HRPEpiC	eye:	n/a
18	chr10:91295855-91295905	Jurkat	blood:	n/a
19	chr10:91295855-91295905	NH-A	brain:	n/a
20	chr10:91295855-91295905	HEK293	kidney:	embryo
21	chr10:91295855-91295905	IMR90	lung:	fetal
22	chr10:91295855-91295905	AG04449	skin:	fetal
23	chr10:91295855-91295905	HNPCEpiC	eye:	n/a
24	chr10:91295855-91295905	AoSMC	blood vessel:	n/a
25	chr10:91295855-91295905	HCF	heart:	n/a
26	chr10:91295855-91295905	NHBE	bronchial:	n/a
27	chr10:91295855-91295905	AG10803	skin:	n/a
28	chr10:91295855-91295905	RPTEC	kidney:	n/a
29	chr10:91295855-91295905	PrEC	prostate:	n/a
30	chr10:91295855-91295905	HL-60	blood:	n/a
31	chr10:91295855-91295905	H1-hESC	embryonic stem cell:	embryo
32	chr10:91295855-91295905	SKMC	muscle:	n/a
33	chr10:91295855-91295905	CMK	blood:	n/a
34	chr10:91295855-91295905	ProgFib	skin:	n/a
35	chr10:91295855-91295905	HEEpiC	esophagus:	n/a
36	chr10:91295855-91295905	HMEC	breast:	n/a
37	chr10:91295855-91295905	HCM	heart:	n/a
38	chr10:91295855-91295905	Hela-S3	cervix:	n/a
39	chr10:91295855-91295905	HRCEpiC	kidney:	n/a
40	chr10:91295855-91295905	NHDF-neo	bronchial:	n/a
41	chr10:91295855-91295905	AG04450	lung:	fetal
42	chr10:91295855-91295905	SK-N-SH	brain:	n/a
43	chr10:91295855-91295905	T-47D	breast:	n/a
44	chr10:91295855-91295905	U87	brain:	n/a
45	chr10:91295855-91295905	BE2_C	brain:	n/a
46	chr10:91295855-91295905	BJ	skin:	n/a
47	chr10:91295855-91295905	NT2-D1	testis:	n/a
48	chr10:91295855-91295905	HUVEC	blood vessel:	n/a
49	chr10:91295855-91295905	HPAEpiC	pulmonary alveolar:	n/a
50	chr10:91295855-91295905	ECC-1	luminal epithelium:	n/a

No data

Variant related genes	Relation type
SLC16A12	TF binding region
SLC16A12	CpG island

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv932413	chr10:91294861-91300246	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91293200-91296000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr10:91293800-91296000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:91293800-91296200	Active TSS	Pancreas	Pancrea
4	chr10:91294000-91296000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr10:91294000-91296000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr10:91294000-91296000	Weak transcription	Fetal Heart	heart
7	chr10:91294000-91296000	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr10:91294000-91296200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:91294600-91296000	Bivalent/Poised TSS	Fetal Brain Female	brain
10	chr10:91294600-91296000	Active TSS	Right Atrium	heart
11	chr10:91294800-91296000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:91294800-91296000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:91294800-91296000	Bivalent/Poised TSS	HepG2	liver
14	chr10:91294800-91296200	Active TSS	HSMMtube	muscle
15	chr10:91295000-91296000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:91295000-91296000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
17	chr10:91295000-91296000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:91295000-91296000	Flanking Active TSS	Liver	Liver
19	chr10:91295000-91296000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
20	chr10:91295000-91296000	Bivalent/Poised TSS	NHEK	skin
21	chr10:91295200-91296000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr10:91295200-91296000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:91295200-91296000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
24	chr10:91295200-91296000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:91295200-91296000	Bivalent/Poised TSS	HUVEC	blood vessel
26	chr10:91295200-91296000	Bivalent/Poised TSS	NHLF	lung
27	chr10:91295200-91296400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
28	chr10:91295200-91297000	Weak transcription	Fetal Kidney	kidney
29	chr10:91295400-91296000	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:91295400-91296000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
31	chr10:91295600-91296000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:91295600-91296000	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
33	chr10:91295600-91296000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:91295600-91296000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
35	chr10:91295600-91296000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
36	chr10:91295600-91296000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
37	chr10:91295600-91296000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
38	chr10:91295600-91296000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
39	chr10:91295600-91296000	Flanking Bivalent TSS/Enh	Placenta	Placenta
40	chr10:91295600-91296200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:91295600-91296200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
42	chr10:91295800-91296000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:91295800-91296000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
44	chr10:91295800-91296000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:91295800-91296000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr10:91295800-91296000	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:91295800-91296000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
48	chr10:91295800-91296000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
49	chr10:91295800-91296000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:91295800-91296000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links