Variant report

Variant	rs533959263
Chromosome Location	chr17:38771160-38771161
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38764344..38766277-chr17:38769758..38772025,3	MCF-7	breast:
2	chr17:38770739..38772968-chr17:38952202..38954281,2	MCF-7	breast:
3	chr17:38770013..38773292-chr17:38776635..38779762,4	MCF-7	breast:
4	chr17:38707503..38711120-chr17:38769935..38775644,8	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv574994	chr17:38719799-38824636	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2758454	chr17:38748300-38850104	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2758689	chr17:38748300-38850104	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv3361502	chr17:38770953-38771190	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv431626	chr17:38770965-38999722	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38763400-38775600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr17:38768600-38771200	Weak transcription	Thymus	Thymus
3	chr17:38769000-38771200	Enhancers	Primary B cells from peripheral blood	blood
4	chr17:38769000-38772600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr17:38769200-38771200	Enhancers	Primary B cells from cord blood	blood
6	chr17:38769600-38771200	Weak transcription	Esophagus	oesophagus
7	chr17:38769600-38784200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr17:38769800-38771200	Weak transcription	Gastric	stomach
9	chr17:38769800-38772800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:38770000-38771200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr17:38770000-38771400	Weak transcription	A549	lung
12	chr17:38770000-38772000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr17:38770000-38773400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:38770000-38773600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr17:38770400-38771200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr17:38770400-38773600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr17:38770400-38774000	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr17:38770600-38772800	Enhancers	Fetal Thymus	thymus
19	chr17:38770600-38774000	Weak transcription	Right Atrium	heart
20	chr17:38770800-38771200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
21	chr17:38770800-38771400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr17:38770800-38771400	Enhancers	Lung	lung
23	chr17:38770800-38771400	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr17:38770800-38772000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr17:38770800-38772400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
26	chr17:38770800-38772400	Enhancers	Spleen	Spleen
27	chr17:38770800-38772600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr17:38770800-38773000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr17:38770800-38776200	Enhancers	Placenta	Placenta
30	chr17:38771000-38771400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
31	chr17:38771000-38771600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr17:38771000-38771800	Flanking Active TSS	Primary T cells from cord blood	blood
33	chr17:38771000-38771800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
34	chr17:38771000-38772000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr17:38771000-38772200	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr17:38771000-38772400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr17:38771000-38772400	Flanking Active TSS	GM12878-XiMat	blood
38	chr17:38771000-38772600	Enhancers	Ovary	ovary
39	chr17:38771000-38775200	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links