Variant report

Variant	rs534034419
Chromosome Location	chr5:52646379-52646380
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949005	chr5:52188028-52808229	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv830297	chr5:52492494-52707758	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv508356	chr5:52646168-52703120	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52642800-52656000	Weak transcription	Aorta	Aorta
2	chr5:52645600-52646400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:52645600-52646600	Weak transcription	Fetal Brain Female	brain
4	chr5:52645600-52647400	Enhancers	HSMM	muscle
5	chr5:52645600-52647400	Enhancers	NHLF	lung
6	chr5:52645600-52647600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:52645800-52646400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:52645800-52646600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:52645800-52647000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:52645800-52647200	Enhancers	Fetal Stomach	stomach
11	chr5:52645800-52647400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:52645800-52647400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:52645800-52647400	Enhancers	NHDF-Ad	bronchial
14	chr5:52646000-52646600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:52646000-52647400	Enhancers	HMEC	breast
16	chr5:52646200-52646600	Weak transcription	Fetal Brain Male	brain
17	chr5:52646200-52647000	Enhancers	NHEK	skin
18	chr5:52646200-52647200	Weak transcription	HSMMtube	muscle
19	chr5:52646200-52647400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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