Variant report

Variant	rs534038416
Chromosome Location	chr9:116904798-116904799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116903323..116904967-chr9:116908753..116911536,2	K562	blood:
2	chr9:116901825..116904823-chr9:116906598..116910253,3	K562	blood:
3	chr9:116899310..116902540-chr9:116902912..116904896,4	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	esv2422396	chr9:116792944-117354862	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
3	esv2422492	chr9:116811294-117366643	Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
4	esv2761285	chr9:116811897-117103268	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
5	nsv870215	chr9:116842614-117070344	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	124 gene(s)	inside rSNPs	diseases
6	nsv893752	chr9:116899258-116944333	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv466526	chr9:116901926-116924781	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv615226	chr9:116901926-116924781	Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv615227	chr9:116904534-116924781	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116892800-116916000	Weak transcription	Gastric	stomach
2	chr9:116900800-116905000	Enhancers	Left Ventricle	heart
3	chr9:116900800-116905200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr9:116900800-116906200	Enhancers	HepG2	liver
5	chr9:116901200-116905000	Enhancers	Fetal Lung	lung
6	chr9:116901800-116904800	Enhancers	Fetal Heart	heart
7	chr9:116901800-116904800	Enhancers	Ovary	ovary
8	chr9:116901800-116905000	Enhancers	Right Atrium	heart
9	chr9:116902200-116906000	Enhancers	Fetal Stomach	stomach
10	chr9:116902400-116905600	Enhancers	HSMMtube	muscle
11	chr9:116902600-116904800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr9:116902600-116907800	Enhancers	Fetal Muscle Leg	muscle
13	chr9:116902800-116904800	Enhancers	Psoas Muscle	Psoas
14	chr9:116903400-116904800	Enhancers	Liver	Liver
15	chr9:116903400-116904800	Enhancers	Colon Smooth Muscle	Colon
16	chr9:116903400-116904800	Enhancers	Fetal Intestine Large	intestine
17	chr9:116903400-116904800	Enhancers	Right Ventricle	heart
18	chr9:116903400-116905800	Enhancers	Fetal Muscle Trunk	muscle
19	chr9:116903800-116904800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:116903800-116904800	Enhancers	Pancreas	Pancrea
21	chr9:116903800-116905000	Enhancers	Adipose Nuclei	Adipose
22	chr9:116903800-116905000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr9:116903800-116905000	Enhancers	Stomach Mucosa	stomach
24	chr9:116904400-116905000	Bivalent Enhancer	Placenta	Placenta
25	chr9:116904600-116904800	Enhancers	Lung	lung
26	chr9:116904600-116904800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr9:116904600-116904800	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links