Variant report

Variant	rs534046491
Chromosome Location	chr12:83783430-83783431
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:83078627..83080390-chr12:83781749..83784378,2	MCF-7	breast:
2	chr12:83079105..83081641-chr12:83780765..83784408,3	MCF-7	breast:
3	chr12:83778698..83781500-chr12:83783078..83784583,2	K562	blood:
4	chr12:83398128..83399066-chr12:83782720..83783715,3	K562	blood:
5	chr12:83782814..83783717-chr20:57797390..57797949,2	MCF-7	breast:
6	chr12:83079259..83080112-chr12:83782817..83783839,5	MCF-7	breast:
7	chr12:82920697..82921255-chr12:83783256..83783780,2	MCF-7	breast:
8	chr12:83079542..83080051-chr12:83782752..83783696,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1042674	chr12:83620899-83942628	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv899353	chr12:83755861-83792347	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv899354	chr12:83755861-83813669	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2762994	chr12:83783139-83785486	Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83783000-83783600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:83783000-83783600	Enhancers	Liver	Liver
3	chr12:83783400-83783600	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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