Variant report

Variant	rs534052474
Chromosome Location	chr3:112079552-112079553
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877341	chr3:112079277-112125521	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112054800-112083000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:112055600-112080200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:112061200-112083000	Weak transcription	Colonic Mucosa	Colon
4	chr3:112062400-112083000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:112065600-112079600	Weak transcription	Fetal Intestine Large	intestine
6	chr3:112066000-112089800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:112067200-112079800	Weak transcription	Fetal Stomach	stomach
8	chr3:112067200-112080400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:112069200-112084000	Weak transcription	Fetal Kidney	kidney
10	chr3:112069200-112095400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:112070200-112086200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:112070600-112080400	Weak transcription	Brain Angular Gyrus	brain
13	chr3:112070600-112080400	Weak transcription	Brain Anterior Caudate	brain
14	chr3:112070600-112086200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:112070600-112088800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:112070800-112079600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:112070800-112084600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:112070800-112090600	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:112071000-112083000	Weak transcription	Brain Substantia Nigra	brain
20	chr3:112071200-112083800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr3:112072000-112080600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:112072400-112080400	Weak transcription	Fetal Brain Male	brain
23	chr3:112073000-112080400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr3:112073400-112079600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:112074200-112079600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:112077000-112079600	Weak transcription	Fetal Lung	lung
27	chr3:112077000-112083000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:112077200-112079600	Weak transcription	Thymus	Thymus
29	chr3:112077200-112081200	Active TSS	Right Atrium	heart
30	chr3:112077200-112082000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr3:112077200-112094200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr3:112077400-112079600	Weak transcription	Fetal Brain Female	brain
33	chr3:112077600-112079600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr3:112077600-112079600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr3:112077600-112079800	Weak transcription	Left Ventricle	heart
36	chr3:112077600-112080400	Active TSS	Fetal Muscle Leg	muscle
37	chr3:112077600-112080400	Weak transcription	Psoas Muscle	Psoas
38	chr3:112077600-112080600	Weak transcription	Primary T cells from cord blood	blood
39	chr3:112077600-112082800	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr3:112077600-112083000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr3:112077600-112107200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr3:112077800-112079600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr3:112077800-112079800	Weak transcription	Primary B cells from cord blood	blood
44	chr3:112077800-112080400	Weak transcription	Right Ventricle	heart
45	chr3:112077800-112082600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr3:112077800-112082800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr3:112077800-112083000	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr3:112077800-112083000	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr3:112077800-112085400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:112077800-112085400	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links