Variant report

Variant	rs534080491
Chromosome Location	chr2:114023883-114023884
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114023172..114025279-chr2:114025318..114027200,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PSD4-1	chr2:114023053-114024550	ENSG00000189223
2	lnc-PSD4-1	chr2:114023053-114024587	ENSG00000189223
3	lnc-PSD4-1	chr2:114023053-114034158	ENSG00000189223.9

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508162	chr2:113983043-114099966	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv535895	chr2:114015492-114037018	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv874901	chr2:114022569-114079565	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113999600-114028400	Weak transcription	Ovary	ovary
2	chr2:114010200-114030400	Weak transcription	GM12878-XiMat	blood
3	chr2:114016200-114028000	Weak transcription	Fetal Brain Female	brain
4	chr2:114016400-114026000	Weak transcription	Fetal Heart	heart
5	chr2:114019200-114024000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr2:114019200-114026800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:114019400-114028200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr2:114019600-114026000	Weak transcription	Spleen	Spleen
9	chr2:114020000-114027800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr2:114021000-114024200	Strong transcription	Placenta	Placenta
11	chr2:114021200-114024000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr2:114021200-114024000	Strong transcription	Lung	lung
13	chr2:114021200-114028200	Strong transcription	Duodenum Mucosa	Duodenum
14	chr2:114021400-114024800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr2:114021600-114026200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:114021600-114028200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr2:114021800-114024000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:114022000-114024600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr2:114022200-114026400	Strong transcription	Primary T cells from cord blood	blood
20	chr2:114022200-114027600	Genic enhancers	Fetal Kidney	kidney
21	chr2:114022400-114025000	Strong transcription	Fetal Thymus	thymus
22	chr2:114022800-114024200	Genic enhancers	Fetal Muscle Leg	muscle
23	chr2:114023000-114026800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr2:114023000-114027200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr2:114023200-114026800	Weak transcription	Colon Smooth Muscle	Colon
26	chr2:114023200-114039800	Weak transcription	Gastric	stomach
27	chr2:114023400-114025000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:114023400-114025000	Weak transcription	Pancreas	Pancrea
29	chr2:114023400-114027000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr2:114023600-114024600	Enhancers	HSMMtube	muscle
31	chr2:114023600-114026200	Genic enhancers	HSMM	muscle
32	chr2:114023800-114024000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:114023800-114024000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr2:114023800-114026200	Weak transcription	Adipose Nuclei	Adipose

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