Variant report

Variant rs534080605
Chromosome Location chr3:52092317-52092318
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52091200-52092400 Enhancers Fetal Heart heart
2 chr3:52091200-52092600 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
3 chr3:52091200-52092800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr3:52091400-52092400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr3:52091400-52092400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
6 chr3:52091400-52092600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
7 chr3:52091600-52092400 Flanking Active TSS Hela-S3 cervix
8 chr3:52091600-52092400 Flanking Bivalent TSS/Enh HepG2 liver
9 chr3:52091800-52092400 Enhancers Primary Natural Killer cells fromperipheralblood blood
10 chr3:52091800-52092400 Enhancers Primary T killer naive cells fromperipheralblood blood
11 chr3:52091800-52092600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr3:52091800-52101800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr3:52091800-52106000 Enhancers Esophagus oesophagus
14 chr3:52092000-52092400 Bivalent Enhancer H9 Derived Neuron Cultured Cells ES cell derived
15 chr3:52092000-52092400 Bivalent Enhancer iPS-18 Cell Line embryonic stem cell
16 chr3:52092000-52092400 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
17 chr3:52092000-52092400 Enhancers Primary monocytes fromperipheralblood blood
18 chr3:52092000-52092400 Enhancers Primary B cells from peripheral blood blood
19 chr3:52092000-52092400 Enhancers Primary T cells fromperipheralblood blood
20 chr3:52092000-52092400 Enhancers Primary T helper cells PMA-I stimulated --
21 chr3:52092000-52092400 Enhancers Primary T helper cells fromperipheralblood blood
22 chr3:52092000-52092400 Enhancers Cortex derived primary cultured neurospheres brain
23 chr3:52092000-52092400 Enhancers Brain Cingulate Gyrus brain
24 chr3:52092000-52092400 Enhancers Colonic Mucosa Colon
25 chr3:52092000-52092400 Enhancers Fetal Adrenal Gland Adrenal Gland
26 chr3:52092000-52092400 Enhancers Fetal Intestine Small intestine
27 chr3:52092000-52092400 Enhancers Fetal Lung lung
28 chr3:52092000-52092400 Enhancers Placenta Placenta
29 chr3:52092000-52092400 Enhancers Fetal Stomach stomach
30 chr3:52092000-52092400 Enhancers Fetal Thymus thymus
31 chr3:52092000-52092400 Enhancers Skeletal Muscle Male skeletal muscle
32 chr3:52092000-52092400 Enhancers Stomach Mucosa stomach
33 chr3:52092000-52092400 Enhancers HSMM muscle
34 chr3:52092000-52092400 Enhancers Monocytes-CD14+_RO01746 blood
35 chr3:52092000-52092400 Enhancers NHDF-Ad bronchial
36 chr3:52092000-52092600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr3:52092000-52092600 Enhancers Fetal Muscle Leg muscle
38 chr3:52092000-52092800 Weak transcription A549 lung
39 chr3:52092000-52095800 Weak transcription Left Ventricle heart
40 chr3:52092000-52096200 Weak transcription Colon Smooth Muscle Colon
41 chr3:52092000-52096400 Weak transcription Muscle Satellite Cultured Cells --
42 chr3:52092000-52096400 Weak transcription HUVEC blood vessel
43 chr3:52092000-52096400 Weak transcription NH-A brain
44 chr3:52092000-52096800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
45 chr3:52092000-52097600 Enhancers GM12878-XiMat blood
46 chr3:52092000-52099200 Weak transcription Right Atrium heart
47 chr3:52092000-52102200 Enhancers HMEC breast
48 chr3:52092000-52106400 Enhancers Breast Myoepithelial Primary Cells Breast
49 chr3:52092200-52092400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr3:52092200-52092400 Active TSS Fetal Brain Female brain

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