Variant report

Variant	rs534088996
Chromosome Location	chr1:209394066-209394067
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3431530	chr1:209393554-209395752	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3340892	chr1:209393979-209395377	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209391400-209394400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:209392000-209394200	Enhancers	HMEC	breast
3	chr1:209392200-209394400	Enhancers	Fetal Brain Male	brain
4	chr1:209392800-209394200	Enhancers	Fetal Thymus	thymus
5	chr1:209392800-209394400	Flanking Active TSS	Dnd41	blood
6	chr1:209393200-209394200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:209393200-209394200	Enhancers	Fetal Stomach	stomach
8	chr1:209393200-209394200	Enhancers	Thymus	Thymus
9	chr1:209393600-209394400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:209393800-209394200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:209393800-209394400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:209394000-209394200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:209394000-209394200	Flanking Active TSS	Brain Cingulate Gyrus	brain
14	chr1:209394000-209394200	Enhancers	Brain Hippocampus Middle	brain
15	chr1:209394000-209394200	Enhancers	Brain Substantia Nigra	brain
16	chr1:209394000-209394600	Weak transcription	Fetal Brain Female	brain
17	chr1:209394000-209395800	Enhancers	Fetal Lung	lung
18	chr1:209394000-209397600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:209394000-209397600	Weak transcription	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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