Variant report

Variant	rs534121134
Chromosome Location	chr11:36618215-36618216
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:36618177-36618253	SH-SY5Y	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36611242..36613521-chr11:36616651..36619477,2	K562	blood:

Variant related genes	Relation type
RAG2	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1850719	chr11:36616867-36657272	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36614200-36619600	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr11:36616600-36621800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:36616600-36640400	Weak transcription	Esophagus	oesophagus
4	chr11:36616600-36657000	Weak transcription	Left Ventricle	heart
5	chr11:36616800-36621800	Active TSS	Fetal Thymus	thymus
6	chr11:36616800-36639600	Weak transcription	Aorta	Aorta
7	chr11:36617000-36622200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr11:36617200-36618400	Enhancers	Colon Smooth Muscle	Colon
9	chr11:36617200-36621800	Active TSS	Thymus	Thymus
10	chr11:36617200-36622000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:36617200-36626800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:36617200-36630000	Weak transcription	HSMMtube	muscle
13	chr11:36617200-36640000	Weak transcription	Fetal Stomach	stomach
14	chr11:36617400-36632400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:36617600-36622000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:36618000-36618400	Enhancers	Psoas Muscle	Psoas
17	chr11:36618000-36623400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:36618000-36640400	Weak transcription	Primary T cells from cord blood	blood
19	chr11:36618200-36618400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:36618200-36618400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:36618200-36620200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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