Variant report

Variant	rs534137688
Chromosome Location	chr14:71132261-71132262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:71131493..71133851-chr14:71142180..71144141,3	MCF-7	breast:
2	chr14:71129537..71132550-chr14:71157568..71160951,3	MCF-7	breast:
3	chr14:71132212..71134545-chr14:71176290..71178585,2	MCF-7	breast:
4	chr14:71131102..71134046-chr14:71180696..71183672,2	MCF-7	breast:
5	chr14:71130492..71133053-chr14:71173924..71176078,3	MCF-7	breast:
6	chr14:71130975..71133007-chr14:71267977..71270888,2	MCF-7	breast:
7	chr14:71109389..71111016-chr14:71129736..71132457,2	MCF-7	breast:
8	chr14:71131895..71134522-chr14:71177148..71179361,2	MCF-7	breast:
9	chr14:71105533..71111408-chr14:71129587..71135247,9	MCF-7	breast:
10	chr14:71131310..71133408-chr14:71170654..71173445,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133985	Chromatin interaction
ENSG00000259115	Chromatin interaction
ENSG00000245466	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1831100	chr14:71132235-71139550	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71112800-71140000	Weak transcription	Fetal Brain Male	brain
2	chr14:71115200-71137000	Weak transcription	Fetal Stomach	stomach
3	chr14:71121200-71133600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:71122800-71133200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:71122800-71136600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:71122800-71138000	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:71127400-71134800	Enhancers	Placenta	Placenta
8	chr14:71127600-71133200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr14:71127600-71133600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:71127600-71134400	Enhancers	Spleen	Spleen
11	chr14:71127800-71134400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr14:71128000-71133000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr14:71128400-71140800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:71128600-71134000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr14:71128600-71134400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr14:71128800-71133200	Enhancers	Esophagus	oesophagus
17	chr14:71128800-71138000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:71129000-71132400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr14:71129000-71137000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr14:71129200-71134400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr14:71129200-71134600	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr14:71129800-71132600	Enhancers	Liver	Liver
23	chr14:71129800-71134400	Enhancers	NHLF	lung
24	chr14:71129800-71134600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:71130000-71133200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr14:71130200-71133400	Enhancers	Primary B cells from cord blood	blood
27	chr14:71130200-71133600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr14:71130200-71136600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr14:71130600-71133000	Enhancers	Lung	lung
30	chr14:71130600-71133200	Enhancers	Duodenum Mucosa	Duodenum
31	chr14:71130800-71133200	Enhancers	H1 Cell Line	embryonic stem cell
32	chr14:71130800-71133200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr14:71130800-71133200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr14:71130800-71133200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:71130800-71133200	Enhancers	Pancreas	Pancrea
36	chr14:71130800-71134600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr14:71131000-71132600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr14:71131000-71132800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr14:71131000-71133000	Weak transcription	NH-A	brain
40	chr14:71131000-71133200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:71131000-71134000	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr14:71131000-71134400	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr14:71131200-71132600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr14:71131200-71132600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr14:71131200-71132600	Weak transcription	Osteobl	bone
46	chr14:71131200-71132800	Weak transcription	NHDF-Ad	bronchial
47	chr14:71131200-71134200	Weak transcription	Fetal Brain Female	brain
48	chr14:71131200-71139600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr14:71131400-71132600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr14:71131400-71133000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links