Variant report

Variant	rs534141021
Chromosome Location	chr11:73395929-73395930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73375007..73377512-chr11:73395012..73396634,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252732	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv390	chr11:73388188-73432899	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	esv19003	chr11:73394993-73398426	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73374400-73427200	Weak transcription	A549	lung
2	chr11:73375200-73404400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:73375800-73400000	Weak transcription	Lung	lung
4	chr11:73375800-73416200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:73376200-73398400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:73376600-73399200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:73376600-73400000	Weak transcription	Spleen	Spleen
8	chr11:73377000-73400000	Weak transcription	Psoas Muscle	Psoas
9	chr11:73381800-73400000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:73382200-73399000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:73382200-73436000	Weak transcription	Small Intestine	intestine
12	chr11:73382200-73441200	Weak transcription	Stomach Mucosa	stomach
13	chr11:73382400-73421600	Weak transcription	Gastric	stomach
14	chr11:73382800-73400400	Weak transcription	Pancreas	Pancrea
15	chr11:73383200-73399000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:73383400-73427200	Weak transcription	Fetal Heart	heart
17	chr11:73384000-73427600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:73384800-73401800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:73385000-73449800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:73385600-73398800	Weak transcription	Aorta	Aorta
21	chr11:73385800-73411400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:73386400-73397800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:73386600-73399400	Weak transcription	Esophagus	oesophagus
24	chr11:73386800-73399400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr11:73387400-73410800	Weak transcription	Colonic Mucosa	Colon
26	chr11:73388000-73396000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:73388200-73396200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:73388200-73396600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:73388400-73396200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:73388400-73398000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:73389000-73399400	Weak transcription	Left Ventricle	heart
32	chr11:73389000-73445400	Weak transcription	Fetal Brain Male	brain
33	chr11:73389200-73397200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:73389200-73398800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:73389200-73400200	Weak transcription	Fetal Kidney	kidney
36	chr11:73389200-73400800	Strong transcription	Fetal Intestine Small	intestine
37	chr11:73389200-73404800	Weak transcription	K562	blood
38	chr11:73389200-73410600	Weak transcription	Brain Angular Gyrus	brain
39	chr11:73389200-73416800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr11:73389200-73427400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr11:73389200-73440200	Weak transcription	Right Ventricle	heart
42	chr11:73389400-73398600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr11:73389400-73399000	Weak transcription	Colon Smooth Muscle	Colon
44	chr11:73389400-73404800	Weak transcription	Brain Substantia Nigra	brain
45	chr11:73389600-73400400	Weak transcription	GM12878-XiMat	blood
46	chr11:73390200-73399200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:73390600-73397000	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:73390600-73398400	Weak transcription	HepG2	liver
49	chr11:73390600-73399200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr11:73390800-73396000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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