Variant report

Variant	rs534162926
Chromosome Location	chr9:95740200-95740201
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95739197..95741391-chr9:95747258..95749743,2	MCF-7	breast:
2	chr9:95731583..95735118-chr9:95737800..95740218,3	K562	blood:
3	chr9:95739140..95740868-chr9:95765712..95767872,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv3366830	chr9:95739831-95742279	Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95728800-95740600	Weak transcription	Small Intestine	intestine
2	chr9:95729000-95741400	Weak transcription	Right Ventricle	heart
3	chr9:95732000-95741200	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:95733400-95741400	Weak transcription	Fetal Brain Female	brain
5	chr9:95733400-95742000	Weak transcription	Fetal Brain Male	brain
6	chr9:95735400-95752600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
7	chr9:95735600-95740200	Genic enhancers	Primary T cells fromperipheralblood	blood
8	chr9:95735800-95740200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:95735800-95740200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:95735800-95740400	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr9:95735800-95742200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr9:95736000-95740200	Strong transcription	Primary hematopoietic stem cells	blood
13	chr9:95736000-95741600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr9:95736200-95740200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr9:95736200-95740400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
16	chr9:95736200-95740400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr9:95736400-95740200	Genic enhancers	Primary T cells from cord blood	blood
18	chr9:95736600-95740200	Strong transcription	Thymus	Thymus
19	chr9:95736600-95740400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr9:95736800-95740200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr9:95736800-95740200	Strong transcription	Dnd41	blood
22	chr9:95736800-95740400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr9:95736800-95743200	Weak transcription	Stomach Mucosa	stomach
24	chr9:95737200-95740200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr9:95737200-95740400	Strong transcription	Brain Germinal Matrix	brain
26	chr9:95737400-95740200	Strong transcription	GM12878-XiMat	blood
27	chr9:95737800-95741200	Weak transcription	Adipose Nuclei	Adipose
28	chr9:95738000-95740200	Strong transcription	Esophagus	oesophagus
29	chr9:95738200-95740400	Genic enhancers	Monocytes-CD14+_RO01746	blood
30	chr9:95738400-95740200	Genic enhancers	Primary monocytes fromperipheralblood	blood
31	chr9:95738600-95740200	Genic enhancers	Spleen	Spleen
32	chr9:95738800-95740200	Genic enhancers	Lung	lung
33	chr9:95739000-95740400	Genic enhancers	Primary B cells from cord blood	blood
34	chr9:95739000-95740400	Genic enhancers	Primary B cells from peripheral blood	blood
35	chr9:95739000-95743800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
36	chr9:95739400-95742400	Weak transcription	Fetal Intestine Large	intestine
37	chr9:95739600-95740200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr9:95739600-95740200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:95739600-95740200	Genic enhancers	Duodenum Mucosa	Duodenum
40	chr9:95739600-95740600	Genic enhancers	Fetal Thymus	thymus
41	chr9:95739600-95740800	Weak transcription	Colonic Mucosa	Colon
42	chr9:95739600-95743000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr9:95739800-95741400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr9:95739800-95741400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr9:95739800-95742400	Weak transcription	Placenta	Placenta
46	chr9:95740000-95740200	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr9:95740000-95741600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:95740000-95741800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr9:95740000-95742200	Weak transcription	Fetal Intestine Small	intestine
50	chr9:95740000-95754800	Weak transcription	Gastric	stomach

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