Variant report

Variant	rs534190677
Chromosome Location	chr9:116112235-116112236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116109902..116113383-chr9:116162345..116166968,8	MCF-7	breast:
2	chr9:116060077..116063011-chr9:116109868..116112387,2	MCF-7	breast:
3	chr9:116110213..116113414-chr9:116171126..116174421,5	MCF-7	breast:
4	chr9:116111218..116114895-chr9:116159419..116161993,4	MCF-7	breast:
5	chr9:116108846..116117047-chr9:116126327..116140994,30	MCF-7	breast:
6	chr9:116111778..116112420-chr9:116163200..116164122,2	MCF-7	breast:
7	chr9:116101294..116104058-chr9:116110419..116112658,2	K562	blood:

Variant related genes	Relation type
ENSG00000165188	Chromatin interaction
ENSG00000148225	Chromatin interaction
ENSG00000148229	Chromatin interaction
ENSG00000148218	Chromatin interaction
ENSG00000119431	Chromatin interaction
ENSG00000157653	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv519849	chr9:116111407-116144973	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116111200-116112400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chr9:116111200-116112400	Bivalent/Poised TSS	Fetal Kidney	kidney
3	chr9:116111200-116112400	Active TSS	Rectal Smooth Muscle	rectum
4	chr9:116111200-116112600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr9:116111200-116112600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr9:116111200-116112600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr9:116111200-116112800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr9:116111200-116113000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr9:116111200-116113000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr9:116111200-116113000	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr9:116111400-116112400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:116111400-116112600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr9:116111400-116112600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr9:116111400-116112800	Active TSS	Pancreas	Pancrea
15	chr9:116111400-116113600	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr9:116111400-116114000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr9:116111600-116112400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
18	chr9:116111600-116112400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:116111600-116112400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:116111600-116112400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:116111600-116112400	Active TSS	Brain Angular Gyrus	brain
22	chr9:116111600-116112400	Active TSS	Brain Anterior Caudate	brain
23	chr9:116111600-116112400	Active TSS	Colon Smooth Muscle	Colon
24	chr9:116111600-116112400	Active TSS	Rectal Mucosa Donor 31	rectum
25	chr9:116111600-116112400	Active TSS	Right Ventricle	heart
26	chr9:116111600-116112400	Active TSS	Sigmoid Colon	Sigmoid Colon
27	chr9:116111600-116112600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr9:116111600-116112600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
29	chr9:116111600-116112800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr9:116111600-116112800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
31	chr9:116111800-116112400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr9:116111800-116112400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:116111800-116112400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr9:116111800-116112600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:116111800-116112600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:116111800-116112600	Active TSS	Aorta	Aorta
37	chr9:116111800-116112600	Active TSS	Esophagus	oesophagus
38	chr9:116111800-116112600	Active TSS	Left Ventricle	heart
39	chr9:116111800-116113600	Active TSS	Gastric	stomach
40	chr9:116112000-116112400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr9:116112000-116112400	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
42	chr9:116112000-116112400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
43	chr9:116112000-116112400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:116112000-116112400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
45	chr9:116112000-116112400	Active TSS	Stomach Mucosa	stomach
46	chr9:116112000-116112400	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr9:116112000-116112400	Flanking Bivalent TSS/Enh	Dnd41	blood
48	chr9:116112000-116112400	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
49	chr9:116112000-116112400	Bivalent/Poised TSS	NH-A	brain
50	chr9:116112000-116112400	Bivalent/Poised TSS	NHLF	lung

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