Variant report

Variant	rs534234188
Chromosome Location	chr10:4259455-4259456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4242485..4244025-chr10:4258479..4260771,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4251600-4259800	Weak transcription	Aorta	Aorta
2	chr10:4255000-4263200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:4256000-4263400	Weak transcription	HSMM	muscle
4	chr10:4256800-4259600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr10:4256800-4259800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:4257000-4259600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:4257000-4259800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:4257000-4259800	Enhancers	Duodenum Mucosa	Duodenum
9	chr10:4257000-4260400	Enhancers	Fetal Heart	heart
10	chr10:4257200-4260400	Enhancers	Small Intestine	intestine
11	chr10:4257400-4259800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:4257400-4260000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:4257400-4282400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:4257600-4259800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr10:4257800-4259600	Weak transcription	Fetal Intestine Large	intestine
16	chr10:4257800-4259800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:4258000-4260800	Weak transcription	HSMMtube	muscle
18	chr10:4258400-4263200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:4258600-4259800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:4258600-4259800	Weak transcription	Right Ventricle	heart
21	chr10:4259000-4259600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:4259200-4259600	Weak transcription	Colonic Mucosa	Colon
23	chr10:4259200-4260000	Enhancers	HUVEC	blood vessel
24	chr10:4259200-4260200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:4259200-4260200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:4259400-4259600	Enhancers	Colon Smooth Muscle	Colon
27	chr10:4259400-4259600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
28	chr10:4259400-4259800	Enhancers	Stomach Smooth Muscle	stomach
29	chr10:4259400-4260000	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr10:4259400-4260000	Enhancers	Fetal Intestine Small	intestine
31	chr10:4259400-4262000	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links