Variant report

Variant	rs534264152
Chromosome Location	chr11:8453646-8453647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797209	chr11:8417452-8474015	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv519052	chr11:8453594-8474884	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8446400-8464000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:8447000-8453800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:8447800-8456000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:8447800-8464200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:8448000-8461000	Weak transcription	Ovary	ovary
6	chr11:8448200-8455200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:8448200-8456000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:8448800-8454400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:8451600-8456000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:8451600-8463600	Weak transcription	Fetal Heart	heart
11	chr11:8451600-8464000	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links