Variant report

Variant	rs534293729
Chromosome Location	chr1:161235563-161235564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv520253	chr1:161234623-161237892	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161231600-161235800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:161231600-161236000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:161231800-161235800	Weak transcription	Brain Anterior Caudate	brain
4	chr1:161232000-161236600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:161232600-161237000	Weak transcription	GM12878-XiMat	blood
6	chr1:161233400-161237000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:161234800-161237600	Enhancers	Ovary	ovary
8	chr1:161235000-161235600	Enhancers	Placenta	Placenta
9	chr1:161235000-161237400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:161235200-161236000	Enhancers	Stomach Smooth Muscle	stomach
11	chr1:161235200-161236200	Enhancers	Fetal Heart	heart
12	chr1:161235200-161236400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:161235200-161237400	Enhancers	Rectal Smooth Muscle	rectum
14	chr1:161235200-161238000	Enhancers	Fetal Stomach	stomach
15	chr1:161235400-161236000	Enhancers	Colon Smooth Muscle	Colon
16	chr1:161235400-161237200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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