Variant report

Variant	rs534312063
Chromosome Location	chr6:11538875-11538876
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:47291454..47293291-chr6:11538059..11540323,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105281	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3323084	chr6:11535666-11540364	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
6	esv3414525	chr6:11538747-11539246	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11536400-11540400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:11536800-11539200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:11536800-11539200	Active TSS	Psoas Muscle	Psoas
4	chr6:11536800-11539400	Active TSS	H9 Cell Line	embryonic stem cell
5	chr6:11536800-11539400	Active TSS	Fetal Intestine Small	intestine
6	chr6:11536800-11539600	Active TSS	A549	lung
7	chr6:11536800-11540000	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr6:11536800-11540400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:11537000-11539000	Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr6:11537000-11539000	Active TSS	Brain Hippocampus Middle	brain
11	chr6:11537000-11539000	Active TSS	Pancreas	Pancrea
12	chr6:11537000-11539000	Bivalent/Poised TSS	HepG2	liver
13	chr6:11537000-11539000	Active TSS	HSMM	muscle
14	chr6:11537000-11539200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:11537000-11539200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:11537000-11539200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:11537000-11539200	Active TSS	Brain Substantia Nigra	brain
18	chr6:11537000-11539200	Active TSS	Colonic Mucosa	Colon
19	chr6:11537000-11539200	Active TSS	Colon Smooth Muscle	Colon
20	chr6:11537000-11539200	Active TSS	Fetal Kidney	kidney
21	chr6:11537000-11539200	Active TSS	Left Ventricle	heart
22	chr6:11537000-11539200	Active TSS	Ovary	ovary
23	chr6:11537000-11539200	Active TSS	Right Ventricle	heart
24	chr6:11537000-11539200	Active TSS	NHDF-Ad	bronchial
25	chr6:11537000-11539400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:11537000-11539600	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr6:11537000-11540000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:11537000-11540000	Active TSS	Brain Anterior Caudate	brain
29	chr6:11537000-11540000	Active TSS	Right Atrium	heart
30	chr6:11537000-11540200	Active TSS	Brain Cingulate Gyrus	brain
31	chr6:11537000-11540400	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr6:11537000-11540600	Active TSS	Brain Angular Gyrus	brain
33	chr6:11537200-11539000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr6:11537200-11539000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
35	chr6:11537200-11539000	Active TSS	Fetal Intestine Large	intestine
36	chr6:11537200-11539000	Active TSS	Gastric	stomach
37	chr6:11537200-11539200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:11537200-11539400	Active TSS	HSMMtube	muscle
39	chr6:11537400-11539000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:11537400-11539000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:11537400-11539000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:11537400-11539000	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:11537400-11539000	Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr6:11537400-11539000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:11537400-11539000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:11537400-11539000	Active TSS	Liver	Liver
47	chr6:11537400-11539000	Active TSS	Esophagus	oesophagus
48	chr6:11537400-11539000	Active TSS	Fetal Lung	lung
49	chr6:11537400-11539000	Active TSS	Lung	lung
50	chr6:11537400-11539000	Active TSS	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links